RNA id: AMCG00015688


Basic Information

Item Value
RNA id AMCG00015688
length 1836
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00015688
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16516896 ~ 16522881 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggagggagggaagaagGATGTAGTGCATGTTGTGGAGAGGAATATTAAACTCTCCACCGCTCCCCTGGTGAAAGAGGGAGTGATGGAAGAGCTGAATAAGGAAGACAGAAAGTGGCTGGAGATGACTTACACTCAAAAGGACCCAGGGAGTGATggacagagagaaagtgtgAGAGGGAGGGTCTTCTGGGCAAGCAAGACCCGTCAGGAAGGCGACTGGTCCATAACAATCGACCAGCTCATCCCTAGCGACAGCGGaatatattattgtatgaaGAGGACAGAGGGTGTGCAGGAGATACCACCCACGGGGGTGAACCTGACTGTGATGGATGCCTCGTCATTCTGCCCCCCTCCCACCAATTCCCCCCTTCCAACACCCCCCCTCacttcccctcccccccccacccccttcctcctcccccatTGCCGTGCCAAGCCCCTGTTTCCGTGGCCGCAGTGCGAGGGGGGGCCCTCACGCTCAGGGGAAGCGATCCTGGGGGAGTCTCTGACTGAATTTGCCGTCAAGCTCTACAATTTCGCCAGCACATCACAGCCCAGCGAGAACCTGCTGCTTTCACCAATCAGCATAGCTGGAGCGCTGTCTCTGCCTCCCAGCTTTAACTGCGTCCATGAGGAGATGAAGAAGTTGGGGACGAGTCTGGGGGTGAGCCTTGAGACAGCCTCAGCTGTATACCACAACCCAGAGCTGAAACTGCAAGACTTCTTTGTCAACCAATCGCTGCAGTTCTATGGAGCTGTGCCTCAACCCCTGACCATTGGCAACGAGGCAAACAGAAAGCTGATCAATGATTGGGTGTCGGAGAAGACCCATGGGCGAATCACCAAATTACTAGACTATGTCTCACCCAAGACTGCCCTGATACTCCTGAACACTGTGTATTACaaagggcgcTGGCAGCAGCAGTTCTTGGAGTCAGAAACAGAGGAGGGAATGTTTAAGACACTGGGGGGCCGCATGGTCAAGGTGCAGGCTCTCAAGGATGTAGAGGTGAAACTGGGGGAGAAGGATGGGTGGAGAGTGCTGTGGAAACTGGCTGCTGACATGGCAAAAATGCCCCTCCTGCCCAGTTCGGTGTCCCTGCCCCGCCTGTCATTGGAGGACCAGCCTGACCTGCTGCTAATGCTGGAATCACTGGGTCTGGAGGATCTCTTCAACATTCCTAACCTGTGTGCTGTCTCCTCCTCctaccccctctctctctccgatgCCCAGCACCACGCAACGCTCTCTTTCTCTGAGGAGGGAGTGGAGGGAGGGGCgacctcctccctctcctttgctcgctccctccctcactTCTCTGCCCTCCATCCCTTCATCCTGGTGCTGTGGAGCGAGGGAGCTGGGGCACCAATGTTTATCGGACGAGTGGCCGACCCCAGTCAGGGGCAGGACAGAGGGAGCGTGGTGTAGAGATGGATAGAAAGAGGGAGGGTGGCATTCAGAGAGATTGGGGGAGGGAATGTATCATGAAGCATTTAACCAATCATGCAGACAACTGAAACACATATGACTTGTGTAAGAGTGTAACACAATAAAGAGACAGCAATTGTCAgactgtgtttatttgtgttctttttaaTCACAGAGTTTGGTGTTTCTGCAGCTAATGTCATGTCAATTAATCCATTATGATAACTGGTTGATGAGAATGAGGTTCCAGTTTCCTGTTGCTGGGGCTGCAGTACCATTAACTATTTTGTCCACTAGGTTGCAGGCATCCAGTGCAAACATCCTCCATAACTGTCCTTAGTTCTCTCTCACTCGTTAACCCTCtctaataatgatacaaaataaaatacactgtat

Function

GO: NA

KEGG:

id description
K04001 SERPING1, C1INH; C1 inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124536 lncRNA upstream 12478 16458860 ~ 16504418 (+) True G99697
TU124537 lncRNA upstream 12478 16458860 ~ 16504418 (+) False G99697
TU124539 lncRNA upstream 12478 16458860 ~ 16504418 (+) False G99697
TU124547 lncRNA upstream 18365 16496297 ~ 16498531 (+) True AMCG00015687
TU124548 lncRNA upstream 20644 16494796 ~ 16496252 (+) False AMCG00015687
TU124611 lncRNA downstream 13204 16536085 ~ 16536332 (+) True G99742
TU124614 lncRNA downstream 15356 16538237 ~ 16539381 (+) True G99745
TU124642 lncRNA downstream 75598 16598479 ~ 16599419 (+) True G99771
TU124643 lncRNA downstream 77320 16600201 ~ 16602947 (+) True G99772
TU124645 lncRNA downstream 82875 16605756 ~ 16605979 (+) True G99774
AMCG00015689 mRNA upstream 4606 16509697 ~ 16512290 (+) True AMCG00015689
AMCG00015685 mRNA upstream 14113 16499697 ~ 16502783 (+) True AMCG00015685
AMCG00015687 mRNA upstream 18372 16494692 ~ 16498524 (+) False AMCG00015687
AMCG00015684 mRNA upstream 33008 16481348 ~ 16483888 (+) True AMCG00015684
AMCG00015678 mRNA upstream 55517 16453984 ~ 16461379 (+) True AMCG00015678
AMCG00015692 mRNA downstream 45567 16568448 ~ 16569251 (+) True AMCG00015692
AMCG00015686 mRNA downstream 48770 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015699 mRNA downstream 156865 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015698 mRNA downstream 205221 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015700 mRNA downstream 312145 16835026 ~ 16870359 (+) True AMCG00015700
TU124453 other upstream 385509 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 715262 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1202482 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1337046 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2416041 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 575578 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1797175 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2222006 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3744526 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6157329 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile