RNA id: AMCG00015692


Basic Information

Item Value
RNA id AMCG00015692
length 804
RNA type mRNA
GC content 0.59
exon number 1
gene id AMCG00015692
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16568448 ~ 16569251 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCCCGGCTATTTCACTAGGACCGCAGGGTACAACTACGTGGCTGTGTTCCCCAACAGTGGAGATCTGTGCTCCGAGTACAAAATCCTGAAGGCGCTGCAGGAGGGGCAAAGCAGTGCAGCACAGCAACTGGCAACCCAGCTGGGGAGCACAGAGCTGGGCTGCGTGGTGTTCTACACCACCAACAGCCCCTGCCTCAGCAAGTGCTTCAGCCAGGAGCAGAGCACCCGCATCGACACGCCTCTGGGGCAGGAGCCCTTCACAACCTGGATGTCAAAGGGCGTAAACCTGTACTTTGTCTACAGCGAATACTTCGGCCAAGATGTCCGCAAACAAGCTGAGGTAAAAGCAGGCCTGAGAAATGTCCGCAACCTGGGCTACCAAGTCCACACCTGCCCCTACCAGCCCAGCACCCCCTGCCCCGAGTGCCTGGAAGCGTTTCCCTGCAACAACTGCCGGGAGAAGTACTGCACTGCCTGCAGCCAGCGTGCCAAGAAATGCGCAGAGTGCCAGAAGGTGCGGCAGTGCGAGGACTGCAGAGGCCTGGAGGAGACGTGCAGTGACTGCAAGACAACCGAGAGCGGCTGCAAGAGGTGTGGCGAGTGCTGGAAGAGACGGGGGAGCTGCAAGGAGTGCAAGAACATCCAGGACTTCTGCAACAACTGCAAGGAAACATCCAGGAACTGCAACACCTGCCAGACGGACCGCGAGAACAAGTGCAAGGGCTGCAGCCTAAAGCACAAGCAGTGCCGGAGCTGCGTCAGCCAGCGCGTCTCCTGCTCGCCTGCGCAGTTAGAGTAG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124614 lncRNA upstream 29067 16538237 ~ 16539381 (+) True G99745
TU124611 lncRNA upstream 32116 16536085 ~ 16536332 (+) True G99742
TU124536 lncRNA upstream 64030 16458860 ~ 16504418 (+) True G99697
TU124537 lncRNA upstream 64030 16458860 ~ 16504418 (+) False G99697
TU124539 lncRNA upstream 64030 16458860 ~ 16504418 (+) False G99697
TU124642 lncRNA downstream 29228 16598479 ~ 16599419 (+) True G99771
TU124643 lncRNA downstream 30950 16600201 ~ 16602947 (+) True G99772
TU124645 lncRNA downstream 36505 16605756 ~ 16605979 (+) True G99774
TU124652 lncRNA downstream 80898 16650149 ~ 16652102 (+) True G99780
TU124678 lncRNA downstream 301369 16870620 ~ 16871120 (+) True G99803
AMCG00015688 mRNA upstream 45567 16516896 ~ 16522881 (+) True AMCG00015688
AMCG00015689 mRNA upstream 56158 16509697 ~ 16512290 (+) True AMCG00015689
AMCG00015685 mRNA upstream 65665 16499697 ~ 16502783 (+) True AMCG00015685
AMCG00015687 mRNA upstream 69924 16494692 ~ 16498524 (+) False AMCG00015687
AMCG00015684 mRNA upstream 84560 16481348 ~ 16483888 (+) True AMCG00015684
AMCG00015686 mRNA downstream 2400 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015699 mRNA downstream 110495 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015698 mRNA downstream 158851 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015700 mRNA downstream 265775 16835026 ~ 16870359 (+) True AMCG00015700
AMCG00015701 mRNA downstream 403114 16972365 ~ 16993281 (+) True AMCG00015701
TU124453 other upstream 437061 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 766814 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1254034 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1388598 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2467593 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 529208 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1750805 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 2175636 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3698156 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 6110959 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile