RNA id: AMCG00015701


Basic Information

Item Value
RNA id AMCG00015701
length 2199
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00015701
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16972365 ~ 16993281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGGGTTTGTAGTTCTCAGAGTTGTTTTCGGCGCAGTGTTTTCGCCGAACCTTGTCAATGGAAAACTACAAGTTCCAGGACGTTTGGGGCGAAGAACAGTGATGGCCGCCTCCTTGGCAGCAGTACACATTATGCGGAATAGtaacatattattttcaaaacatttgttaaagACGATTAGTTATTACAGTCTATTTGCAGGAAATATACGGACTTTAAGTTACAAATGCAGTCTTCAAAACAAAGAGAGATGTGATCCTAATCCTCTTGTGGGAGTGGTGGGATTGGAGATCCATGCGCAGATCCACTCCAACTCCAAGCTTTTCTCCAGCTCCCAAGTGAGGTTCTCCTCTCCACCTAATTCTCTGGTGTCATTCTTCGATGCCTCCTTACCTGGCACTTTACCTGTCCTCAATAGAAGATGTGTGGAGGCAGCTGTTATGACAGGCTTGGCCCTGAACTGTACAATCAACAAGAAGTCATTTTTTGACCGGAAGCATTATTTCTATGCTGATCTACCTGCTGGCTATCAGATAACCCAGCAGAGAGTGCCCATTGCTGTAAACGGCAGCCTCACCTACAGCCTTCTACTGGGACACAAGCAGAACCAGGTGGTGACCAAGACTGTTAGGATTAAGCAGATACAGCTAGAGCAGGACAGTGGAAAGAGCCTACATGATGATTCCAGGAGCCAGACCCTCATAGATTTGAACCGAGCAGGTGTGGGGCTGATGGAGCTGGTAATGGAGCCTGACATGTGCTGTGGGGaggaggcagcagcagcagtacgAGAACTTCAGCTCATCTTGCAGACACTGGGGACGAGCCAGGGCAACATGGCAGAGGGCCAGTTGAGAGTGGATGCCAACATTTCTGTTCATCGGCCTGATGATCCCTTGGGGGTGAGGACAGAGGTGAAGAACATTAACAGTGCCCGTTTCCTGGCCAAGGCAATAGACTATGAAATTCAGAGACAGATTGGTGTCCTTGAGAGTGGAGGCGTGATATTGAATGAGACGCGTTCCTTTGATTATAAGTCTGGGCTCACAGTGCCAATGAGGGACAAAGAAGGGCTGCTGGATTACAGGTTCATGCCAGAGCCTAATCTGCCACCCCTGATATTGTGTGAAGGGGAGACAGTCCCCCCAGGAGCTCACCCACAGCAAATGGTTAACATTGACTGGATCAAGAAACAGCTGCCTGAATTGCCCAGAGTGAAGCGCAGACACCTGGTGGAAGATTATGGCATTCTCCCGGAACACAGCTTCACACTGGTGAATGAAGAAGGGTTGATGGACTATTTTATCAGTGTATTGCAAGAGACCAAAGCAGAGCCAAAGAAGGTGATTGGATGGATCATTAAAGACCTGTTGGGGCTTCTCAAGCAGCACAACCTGAATGTCAGTCAAAGCCCCATTTCCCCATCCTCTATGGCAGAGCTGCTTAACCTCTTAGAGACGGGACAGATCTCCTCTACAGTGGCAAAACTGGTGTTGCAGGAGCTGTGGAAAGGTCCAGGGACGAATGCCACTCAGATTGTTCGTGATCAGAATCTAAGCCTTGTGTGTGATGCGATCAAACTAGAGCACATCTGTCAGACTGTCATTGACTCGCACCAGGAGGAGGTTAGAGTAATCAGGAGAGGAAACAAAAAGGTCCTGAACAAACTGGTGGGGCTGGTGCAGAAGGAGACGAAAGGTCGGGCGGATCCTGTGCAGGTCAGAGCTATATTGGAAAAGAAGACGTCCTGATCACAAAGCACCTCAGCTCTCCCTGGTTGTCAAAGCTTGTCTTCAAGAATGGTTGTTGAATTTATCATTCCTCAGCACTGAACATGTGCATGTCTTTTTAACTGGAGCTGGATCTCTAAATTCAGGCACAACCGCATTTATAAAAGGACATTCAGATGCTGTTTAAAAGTTGAGATTTATAAGTCAAATAAACAATAGTTATTTATAAAAGGGTTTAATTTAACAGATCTGATAGTAGTCATGCCTGTCGTTATCTACTGTCATCATCCTCTAGTAAATGTGGGGTTGAGGGATTAcaaaccattttttgttttatgttgcttgatgtgcttttctgtgcatttgttttacaatggtTTACTTTAGTCACTGTACAAtaacatgtattaaaatactttcCACATGCACCCTGCATAGTTCtatcacaaacaaaaatggtATACCAC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor molecular_function

KEGG:

id description
K02434 gatB, PET112; aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124678 lncRNA upstream 101245 16870620 ~ 16871120 (+) True G99803
TU124652 lncRNA upstream 320263 16650149 ~ 16652102 (+) True G99780
TU124645 lncRNA upstream 366386 16605756 ~ 16605979 (+) True G99774
TU124643 lncRNA upstream 369418 16600201 ~ 16602947 (+) True G99772
TU124642 lncRNA upstream 372946 16598479 ~ 16599419 (+) True G99771
TU124710 lncRNA downstream 12131 17005412 ~ 17006477 (+) True G99833
TU124713 lncRNA downstream 19381 17012662 ~ 17013041 (+) True G99836
TU124716 lncRNA downstream 39148 17032429 ~ 17032729 (+) True G99839
TU124717 lncRNA downstream 73880 17067161 ~ 17067590 (+) True G99840
TU124719 lncRNA downstream 77302 17070583 ~ 17071054 (+) True G99842
AMCG00015700 mRNA upstream 102006 16835026 ~ 16870359 (+) True AMCG00015700
AMCG00015698 mRNA upstream 183856 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015699 mRNA upstream 261563 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015686 mRNA upstream 397179 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015692 mRNA upstream 403114 16568448 ~ 16569251 (+) True AMCG00015692
AMCG00015703 mRNA downstream 110390 17103671 ~ 17131775 (+) True AMCG00015703
AMCG00015706 mRNA downstream 159994 17153275 ~ 17153478 (+) True AMCG00015706
AMCG00015705 mRNA downstream 193557 17186838 ~ 17235784 (+) True AMCG00015705
AMCG00015708 mRNA downstream 288398 17281679 ~ 17300446 (+) True AMCG00015708
AMCG00015707 mRNA downstream 325012 17318293 ~ 17330594 (+) True AMCG00015707
TU124453 other upstream 840978 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 1170731 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1657951 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1792515 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2871510 14096945 ~ 14100855 (+) True G99074
TU124723 other downstream 105178 17098459 ~ 17131749 (+) False AMCG00015703
TU124919 other downstream 1326775 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 1751606 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3274126 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 5686929 22680210 ~ 22680773 (+) False AMCG00015796

Expression Profile