RNA id: TU124723


Basic Information

Item Value
RNA id TU124723
length 1472
RNA type TUCP
GC content 0.45
exon number 6
gene id AMCG00015703
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17098459 ~ 17131775 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGTAAAGAATTTCCCTTacgcaaaaaaataataatcgcaAAAGCATGTTGCATGACAGGCTTGTTTTATCACTTCTTAGACAcctctgcttttgtttgttttaaactttttttttttttttttTTTCAggcttttactttttcttttattgaacTGTGCTTCATCTGAACATTTCAGACTGTCTCCTGGACTGGGGGCTCGTAGCCATCAGCCCTCTCCACTTTTGCACCAGATTCATCTCCTGCTGGCTTGGCAGTGGTGCTGGTGCCTCCTCCCTCGCCATGAAGCTCCATCAGTTTGCCCACtgcaaccacacacacacaaacagtcaaCACTCGAAAACATGCCTTTATATTCTTCTCCTGTATCAGCAAGGCTGGTCAGAAACCTTTTCATTATACCAACTTAAATGACTGCATATACATTCATTAAAGTTTAAGCGCTGCACTACTTAAGGGACACTGTGTTGTCTAATGAGCACGAGCACTTCTGGTCCTCGTTTAAGACAAGGTGGAACTGAACTGTTCTTTAGTAGTCCAGATCTTTTCATAGTTGGGTGCCAGTAAAATGGTCAATAACATGAAGCCTTTGGTTAATGTCTACCATCTAGTTATTAAAAGAACAGTTGTAAGCACCATTTTTTCACATaatgaacaaagaaaaccttaTTAGTTAGGCTCATTAGTTTAACCACTCACAAGTGCTGACCCAATTACAACATGCCTTTGTTAAAACTGGAGATTGGTTTGCATCTCTAAACCCATATTTAAAAGTGTACTTACACTCAAACTTAGGCTTTTTGAGCATCTTGACCTTCCTGACGAAGACGTCGTGCAGGGGGTAGATCGACTGACAGGCCTTTTCAATGTCCTTGCCAACACTGTCCGGAAGCTTGTTTACAACTTCCTTGAGGTCGTTGGTCTGTACCTCCCGGGTCATGATTTCCATCATCTTTTTGCGGATCTGACGGACCTGCTGGTGCTGGGCATAGGAGGTCTTGCGGATCTGGTTGGCCCGCTTCTTGGTGAAGCCCACGCAGAACAGCCGAAGCAGGTAGCCGTCGGTTGTCTTTACATCGACATGGGCCTCAATCATAGTGCCATTTCTTGACCATGGAGCACATCTTGTCACGGGTGAGGTCCATGCCATGGAAGTTGGTCAGACAGTTCTTGCCTTGGACATCTTCTGTAATCAGCTTGAATTTACGGAAGGCCACCTCATCGTTCTGCAGATCAGCCAGACTGACTTCGAACACGCGTCCCTTCAGACCGTCGGAGGCGATTTGGTTCCCTGTGTCCTGGTGACCAGCGTCTTCCCCAGGTTCCTGATGTTGAACATGGCTGGTGCCTTGACATCATACCAGTCCTTCTTGGAGAAAGGGTCCACCCCTTCTTTTTGGCACCTTTCTTGCCTCCTTTGGTCAGCCTCTTATTCTTGCCGACTGCCATGTTGGACACACAGAGTGAAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124719 lncRNA upstream 27405 17070583 ~ 17071054 (+) True G99842
TU124717 lncRNA upstream 30869 17067161 ~ 17067590 (+) True G99840
TU124716 lncRNA upstream 65730 17032429 ~ 17032729 (+) True G99839
TU124713 lncRNA upstream 85418 17012662 ~ 17013041 (+) True G99836
TU124710 lncRNA upstream 91982 17005412 ~ 17006477 (+) True G99833
TU124755 lncRNA downstream 318335 17450084 ~ 17465514 (+) True G99867
TU124810 lncRNA downstream 468954 17600703 ~ 17600908 (+) True G99915
TU124831 lncRNA downstream 705868 17837617 ~ 17837900 (+) True G99933
TU124832 lncRNA downstream 801250 17932999 ~ 17933328 (+) True G99934
TU124830 lncRNA downstream 822736 17954485 ~ 17956630 (+) True G99932
AMCG00015701 mRNA upstream 105178 16972365 ~ 16993281 (+) True AMCG00015701
AMCG00015700 mRNA upstream 228100 16835026 ~ 16870359 (+) True AMCG00015700
AMCG00015698 mRNA upstream 309950 16728102 ~ 16788509 (+) True AMCG00015698
AMCG00015699 mRNA upstream 387657 16679746 ~ 16710802 (+) True AMCG00015699
AMCG00015686 mRNA upstream 523273 16571651 ~ 16575186 (+) True AMCG00015686
AMCG00015706 mRNA downstream 21526 17153275 ~ 17153478 (+) True AMCG00015706
AMCG00015705 mRNA downstream 55089 17186838 ~ 17235784 (+) True AMCG00015705
AMCG00015708 mRNA downstream 149930 17281679 ~ 17300446 (+) True AMCG00015708
AMCG00015707 mRNA downstream 186544 17318293 ~ 17330594 (+) True AMCG00015707
AMCG00015710 mRNA downstream 219533 17351282 ~ 17385325 (+) True AMCG00015710
TU124453 other upstream 967072 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 1296825 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 1784045 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 1918609 15048923 ~ 15179850 (+) False AMCG00015657
TU123659 other upstream 2997604 14096945 ~ 14100855 (+) True G99074
TU124919 other downstream 1188307 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 1613138 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 3135658 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 5548461 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 7733340 24865089 ~ 24865552 (+) True G101061

Expression Profile