RNA id: AMCG00015709


Basic Information

Item Value
RNA id AMCG00015709
length 1380
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00015709
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17416375 ~ 17447661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gCCCTTGAGAGTGAGTTTGTTTCCTGTCAGCTCCACCAGTGGATAGACCTGATTTTTGGGTACAAGCAGCAAGGACCAGAGGCCATCCGAGCCCTCAATGTCTTCTACTATCTGACCTACGAAGGCGCCGTCAACTTGAGCTCCATCTCTGATCCAGTGCTTAGGGAGGCTGTGGAAGCTCAGATACGAAGTTTTGGACAAACCCCTTGTCAGCTGCTAATAGAGCCACATCCCCCAAGGAGTTCTGCCATGCAGGTGTATCTCCTCCTGCAGACCCCCCTGATGTTCACGGAGCAAATGCAGCAGGATGTCATCATGGTGCTCAAGTTCCCGTCCAACTCTCCGGTTGCTCATGTTGCGGCCAACACCCAGCCTGGCCTGTCTGCTGCTGCAATCATCACCGTCACCGCAAACCGGCTCTTCGCTGTCAACAAGTGGCACGGACTTACTGGCCATCAAGGCTCTGTCCAGGAGCAGCCGTACCAGCTGCCTGTGGAAATCGATCCTCTGATAGCCAGTAACGTAGGCACCCACAGAAGGCAAATCACTGACCTTTTGGACCAGAGCATTCAGATCCATTCCCAGTGCTTTGTGATCACTGCTGACAACCGATTCATCCTGGTCTGTGGGTTCTGGGACAAGAGCTTCCGCGTCTACTCCACTGACTCAGgAAAATTGACGCAGATAGTCTTTGGACATCGTGATGTGGTGACATGCTTGGCGCGGTCTGAATCCTACATTGGAGGAGATTGCTACGTGCTCTCAGGCTCACGAGACGCCACCCTTCTGCTCTGGTATTGGAATGGCAAAAACAGCAGCATTGGAGAGAGCCCCGGCAcCGAGTTTGTCACTCCTAGAGCCATACTGACGGGACATGACTGTGAGATCACCTGTGCCACAGTTTGTGCAGAGTTGGGCTTGGTCATCAGTGGCTCCAAAGAGGGCCCTTGCCTGATTCATTCCATGAATGGAGACCTTTTGCGAACACTGGAGAGTCCAGCAGGCTGTGTGTGCCCTAAACTAATCCAGTCATCCACAGAAGGGCACTGCGTGGTATATTATGTCAAGGGCCACTTCTGCGTCTTCAGTGTGAACGGAAAGCTGCTGGGCCACATGGAAGTTGATGAAAATATCAAGGCCATGCTGCTGAGCCGCGATGGGCAGTACCTACTTTCAGGAGGGGATGGAGGAGTTCTAACAGTCTGGCAGGTCCATGACCTCAAACAGCTCTTCACCTACCCAGGCTGTGATGCTGCGATCAGGTCAATGGCCATGTCACATGACCAAAGGTGTATAATTACTGGCATGGCCTCCGGAAGCATAGTACTTTTTTACAATGATTTTAATCGATGGCATCATGAATATCAAACAAGATACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124719 lncRNA upstream 345321 17070583 ~ 17071054 (+) True G99842
TU124717 lncRNA upstream 348785 17067161 ~ 17067590 (+) True G99840
TU124716 lncRNA upstream 383646 17032429 ~ 17032729 (+) True G99839
TU124713 lncRNA upstream 403334 17012662 ~ 17013041 (+) True G99836
TU124710 lncRNA upstream 409898 17005412 ~ 17006477 (+) True G99833
TU124755 lncRNA downstream 2423 17450084 ~ 17465514 (+) True G99867
TU124810 lncRNA downstream 153042 17600703 ~ 17600908 (+) True G99915
TU124831 lncRNA downstream 389956 17837617 ~ 17837900 (+) True G99933
TU124832 lncRNA downstream 485338 17932999 ~ 17933328 (+) True G99934
TU124830 lncRNA downstream 506824 17954485 ~ 17956630 (+) True G99932
AMCG00015710 mRNA upstream 31050 17351282 ~ 17385325 (+) True AMCG00015710
AMCG00015707 mRNA upstream 85781 17318293 ~ 17330594 (+) True AMCG00015707
AMCG00015708 mRNA upstream 115929 17281679 ~ 17300446 (+) True AMCG00015708
AMCG00015705 mRNA upstream 180591 17186838 ~ 17235784 (+) True AMCG00015705
AMCG00015706 mRNA upstream 262897 17153275 ~ 17153478 (+) True AMCG00015706
AMCG00015716 mRNA downstream 442831 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015714 mRNA downstream 497828 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015715 mRNA downstream 610221 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015726 mRNA downstream 1004716 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015728 mRNA downstream 1230157 18677818 ~ 18682808 (+) True AMCG00015728
TU124723 other upstream 284626 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 1284988 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 1614741 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 2101961 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 2236525 15048923 ~ 15179850 (+) False AMCG00015657
TU124919 other downstream 872395 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 1297226 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 2819746 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 5232549 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 7417428 24865089 ~ 24865552 (+) True G101061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_09396593_09479514.mRNA True 4243 mRNA 0.45 20 CI01000300 9396092 ~ 9480673 (-)