RNA id: AMCG00015714


Basic Information

Item Value
RNA id AMCG00015714
length 312
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00015714
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17945489 ~ 17953069 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cCCAAAGAAGGCCTGAAAAACCAAGCAGCATTTGAGGAAATGAGAGTGAACTACATAAAAGAACTCCGTAGATCAGTAGGGAAGGCCACAAACAACTCTGGACAGACGTGGCAGAGGTTCTACCAGCTCACCAAACTACTGGATGCCACGCATGATctgGTGAGTAATCTCCTAGATTTCTGCTTCTACACCTTCCGCGAGTCCCAGGCCCTGAAAGTGGAATTTCCAGAAATGCTGGTGGAAATTATAAGTGACCAGATACCAAAGGTGGAATCGGGCATGACCCGGACACTCTACTTTCACAAAAAGTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124832 lncRNA upstream 12161 17932999 ~ 17933328 (+) True G99934
TU124831 lncRNA upstream 107589 17837617 ~ 17837900 (+) True G99933
TU124810 lncRNA upstream 344581 17600703 ~ 17600908 (+) True G99915
TU124755 lncRNA upstream 479975 17450084 ~ 17465514 (+) True G99867
TU124719 lncRNA upstream 874435 17070583 ~ 17071054 (+) True G99842
TU124830 lncRNA downstream 1416 17954485 ~ 17956630 (+) True G99932
TU124914 lncRNA downstream 343970 18297039 ~ 18298304 (+) True G100005
TU124964 lncRNA downstream 675253 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA downstream 675253 18628322 ~ 18629571 (+) True G100046
TU124967 lncRNA downstream 675253 18628322 ~ 18630144 (+) False G100046
AMCG00015716 mRNA upstream 26007 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015709 mRNA upstream 497828 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015710 mRNA upstream 560164 17351282 ~ 17385325 (+) True AMCG00015710
AMCG00015707 mRNA upstream 614895 17318293 ~ 17330594 (+) True AMCG00015707
AMCG00015708 mRNA upstream 645043 17281679 ~ 17300446 (+) True AMCG00015708
AMCG00015715 mRNA downstream 104813 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015726 mRNA downstream 499308 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015728 mRNA downstream 724749 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015727 mRNA downstream 736669 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015725 mRNA downstream 817057 18770126 ~ 18771333 (+) False AMCG00015725
TU124723 other upstream 813740 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 1814102 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2143855 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 2631075 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 2765639 15048923 ~ 15179850 (+) False AMCG00015657
TU124919 other downstream 366987 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 791818 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 2314338 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 4727141 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6912020 24865089 ~ 24865552 (+) True G101061

Expression Profile