RNA id: AMCG00015715


Basic Information

Item Value
RNA id AMCG00015715
length 2579
RNA type mRNA
GC content 0.50
exon number 12
gene id AMCG00015715
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18057882 ~ 18068675 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATGCCCAATCCTAGCACTCGTCCCAAGCCTGTGAGACGCAGTTGCCGGCTGTCAAGGGGAAATGGAGCTAGGAATGAGCTGGTGTCTAGGTCTCTGGAGAGCGCACAGCAGTGCCTAGTGAATCAAGATTATGGAACTGCTTTTGTCCATTATCTCTTAGTGATTAACCTGGCCCCTGCACTGAAGGATTTTGCCAGGGAATCCTTCAGATTTACTCTTTTCAAATGGGCAGAGGAGCTGGATTCCCTAGGCCGCATCCAGGATTTGTTCAACAGTTACGAGCAGGCACTGGAGCTATACCCAGATGATGAAGTCATTGTGAACAGTATGGGAGAGCACCTTTTCAGAATGGGGTTTCGAGATGAAGCTGCTGGCCACTTCCACAAAGCTTTAAAGCTGAAGCCCGACTTTGCTGATGCAAAAGAGAATTTCTACAGAGTTGCCAACTGGCTAGTGGAACGCTGGCATTTCCTCATGCTTAATGACAGCAGGAGGAACACTAAGTATCAGCAAGCCATCCAGAAAGCTGTGAAATCTGGGTACAATGTTGTGCTCGACATTGGCACTGGCACAGGTATTCTTGGTATGTGTGCTAAGACTGCAGGGGCTGCTGAAGTTTATGCCTGTGAGCTTTCTAAGACCATGTATGAGCTTGCCTGTGAAGTAGTTTCTGCCAATGGAATGAATGGAGAGATTAAGATTCTGCACATGAAATCTCTGGAAATGGAAATCCCTAAAGACATCCCTAATAGgGTTTCACTTGTGGTAACTGAAACTGTGGATGCAGGATTGTTTGGTGAAGGTATTATAGAAAGCTTGATTCATGCTTGGAACCATTTACTCCTGCCCCCTCAGATTTCCGCCAAGCCGTCAAGCAACCCCGCGAAAACAGGACGAGTCATCCCTGCCGGTGCCACCGTGTTTGGCATGGCAGTGCAGTGTCCAGAGATACGGCGCCATCACAGggtgtgtgtgACTGCAGTTGGGGGCCTGTGTTTATCAGGAGTTGGGGAACTCCATAGCCCTGTGAGCTACTCCAAGGATGCCGATGACTCTACAGAGCCCTACACCACTGAGCGGCTGAGCCAGATCCAGGGAGGATATACTCCTCTGACTGAACCCTTCCAGGCTCTCGCTATTGATTTCAACAACCCACAGGAGCTGGAGGGCCTGTGCTCTCGGAAGGCCTCTCAGATCAGCTTGCCGATTACCCAGGAAGGTGTCTTGGATGCCATTGCTGTCTGGTTTGTGCTCCATCTCGATGAGGAAAATAGCCTTTCCACAGGGCCCCAGGAAGAGACCTGTTGGGAGCAGGCCATCTATCCTGTCCAGAATCTCTTCAATTGCACGGTTAAGCCTGGTGATAGCCTATTGCTGGAAGTTTCATGTCAGGATGCATACTTGAGGATCTGCAGTTTGGACTTGGTTACAACTGAGAAAATGGCTGTCGTAGAAGAGGCATCTCAAAGATTGGAGACCAACTCTACCTCCAGTGCTGAAGCTGAGCTCTGCACTGCTTTAGCCTGCCTTCAAACAAGCCAGGGAAGTGGTCAGCGGAAGTTTATGTTGGAATGCTCTGAAATAGCCCTGCTGAACAATTCCCAATATCATGACAGTTTTAAAAGAGCCTTTTGCAAACTTCTGTCAGCTTTAAAAACAGGCAATAAATCTGAGGCTGTTGAGGATCCTGTGTGCATCACTGACTGTGGGAAAAAATGTACTCGAGAACATGCACACTCTGCCCCCGACCCCTTGTACGTACTAGATGTCTCTGAGGGCTTCTCAGTCTTGTCGCTGATCGCAGCCAAGCTCGGCTCGGTAAAGGCCTTTAGCTCTGTGGAAAAGGAACAGCACCAAGCGGTGTTAAAACGTTTGGCAGAGGTTAACGGGGTTTGTGAGCAGGCTCTGGAGTTTTGGCTCAATCATGTGGAGGATGACTCCTCTGTTCTGCAGAGGCCATCGACAGAAAAGCTTTGGAGTGCCATTGTCCTGGACTGCGTGGAGACCTGTGGGCTTGTGCGGCAGGAGCTGATGGAGAAAGCTAATCTTGCCAGgTGCCTTCTGGAGGACAGGGGGCGAATATTTCCTGAGCGTATTGTGATGTACGGGATGCTGGTTGAATCTGACACATTGCTTTTGGAGAGTGCTGTCCAGGGCACAGAGCCAACTCTTGGATTCAATATTGCACCATTTATCAACCAGTTTACAGTGCCTGTCCATGTGTTTCTGGATCTCTCTACCCTTCCTTGCAAACACCTGAGCCAGCCAGTCGAACTCTTCACACTAGACCTCATGAACTCCAGGGCAAATTACACAAGCCGAGAGGTTAAGGTGGAGGCCTGCGCTTCAGGCAGAGTGACAGCAGTGCCGTTCTGGTACCAGGTCCACCTGGATGATGAGATCAGCCTGAGCACCTTCAGTAAGGACTCCCACTGGAAACAGGCTGCTGTGGTTCTCCATCAGCCCATAGAGGTTTGTACAGGGGACCAGCTTGTACTCCGCATTCAGCAGCACAAGAGCAGCATCTCCATCACTGCGCGCCGAGAGGACCCACAAGCAGCCACCGCCTCTGCCAAC

Function

GO: NA

KEGG:

id description
K19737 PRMT9; type II protein arginine methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124830 lncRNA upstream 101252 17954485 ~ 17956630 (+) True G99932
TU124832 lncRNA upstream 124554 17932999 ~ 17933328 (+) True G99934
TU124831 lncRNA upstream 219982 17837617 ~ 17837900 (+) True G99933
TU124810 lncRNA upstream 456974 17600703 ~ 17600908 (+) True G99915
TU124755 lncRNA upstream 592368 17450084 ~ 17465514 (+) True G99867
TU124914 lncRNA downstream 228364 18297039 ~ 18298304 (+) True G100005
TU124964 lncRNA downstream 559647 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA downstream 559647 18628322 ~ 18629571 (+) True G100046
TU124967 lncRNA downstream 559647 18628322 ~ 18630144 (+) False G100046
TU125015 lncRNA downstream 689387 18758062 ~ 18844449 (+) True G100082
AMCG00015714 mRNA upstream 104813 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015716 mRNA upstream 138400 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015709 mRNA upstream 610221 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015710 mRNA upstream 672557 17351282 ~ 17385325 (+) True AMCG00015710
AMCG00015707 mRNA upstream 727288 17318293 ~ 17330594 (+) True AMCG00015707
AMCG00015726 mRNA downstream 383702 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015728 mRNA downstream 609143 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015727 mRNA downstream 621063 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015725 mRNA downstream 701451 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015731 mRNA downstream 737414 18806089 ~ 18828015 (+) True AMCG00015731
TU124723 other upstream 926133 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 1926495 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2256248 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 2743468 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 2878032 15048923 ~ 15179850 (+) False AMCG00015657
TU124919 other downstream 251381 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 676212 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 2198732 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 4611535 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6796414 24865089 ~ 24865552 (+) True G101061

Expression Profile