RNA id: AMCG00015716


Basic Information

Item Value
RNA id AMCG00015716
length 846
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00015716
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17890492 ~ 17919482 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCATCATTAAGAAATTCCTCTTCCGGTTCCTCTGCCCCTGCAAAGGTGTGTTTGGTCTGTGGGGATGAAGCATCTGGATGTCATTATGGTGTTGTTACTTGTGGCAGCTGTAAGGTTTTCTTCAAAAGAGCCGTAGAAGgTCAGCACAACTACCTGTGTGCAGGGAGAAATGACTGCATCATTGACAAGATTCGAAGAAAGAACTGCCCAGCCTGCAGAGTACGAAAGTGTCTGCAGGCTGGAATGAACTTGGGAGCACGGAAGTCAAAGAAGCTTGGGAAATTAAAAGGAGTGAGTGAGGAGCAGCAACTTCAGAGCCCAAAGGAAGGCCAGACGTATTTGGCTACAGAAAAGGACTTGAGTGCCAGTACCACCCTGGTCCCTCACGTACCAGGTGTGACGCCATACCTGGCTCCGTCCATCTGCAGCATCCTGGAAATCGTCGAGCCAGAAATTGTTTATGCAGGGTATGACAACAGCCAACCAGACACCACAGACCACCTGCTCTCCAGTCTAAATCAGCTAGCAGGAAAACAGATGATCCGAGTTGTCAAGTGGGCAAAGGTACTTCCAGGATTCAGAAGTTTGCCAATTGAGGACCAAATCACCCTCATTCAATACTCTTGGATGTGTCTCTCTTCATTCGCCCTCAGCTGGAGGTCCTATAAACATACCAGTGGCCAGATGTTGTATTTTGCACCGGACCTTGTTTTCAATGAGGAAAGGATGAAGCAGTCGGCAATGTATGACCTGTGCCAGGGCATGCGCCAGGTGAGCCAGGAGTTTGTGCGGCTACAGCTGACCTATGAAGAGTTCCTGGCCATGAAAGTACTGCTGCTGCTAAGC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124831 lncRNA upstream 52592 17837617 ~ 17837900 (+) True G99933
TU124810 lncRNA upstream 289584 17600703 ~ 17600908 (+) True G99915
TU124755 lncRNA upstream 424978 17450084 ~ 17465514 (+) True G99867
TU124719 lncRNA upstream 819438 17070583 ~ 17071054 (+) True G99842
TU124717 lncRNA upstream 822902 17067161 ~ 17067590 (+) True G99840
TU124832 lncRNA downstream 13517 17932999 ~ 17933328 (+) True G99934
TU124830 lncRNA downstream 35003 17954485 ~ 17956630 (+) True G99932
TU124914 lncRNA downstream 377557 18297039 ~ 18298304 (+) True G100005
TU124964 lncRNA downstream 708840 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA downstream 708840 18628322 ~ 18629571 (+) True G100046
AMCG00015709 mRNA upstream 442831 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015710 mRNA upstream 505167 17351282 ~ 17385325 (+) True AMCG00015710
AMCG00015707 mRNA upstream 559898 17318293 ~ 17330594 (+) True AMCG00015707
AMCG00015708 mRNA upstream 590046 17281679 ~ 17300446 (+) True AMCG00015708
AMCG00015705 mRNA upstream 654708 17186838 ~ 17235784 (+) True AMCG00015705
AMCG00015714 mRNA downstream 26007 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015715 mRNA downstream 138400 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015726 mRNA downstream 532895 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015728 mRNA downstream 758336 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015727 mRNA downstream 770256 18689738 ~ 18716514 (+) True AMCG00015727
TU124723 other upstream 758743 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 1759105 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2088858 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 2576078 15314036 ~ 15314414 (+) True G99475
TU124082 other upstream 2710642 15048923 ~ 15179850 (+) False AMCG00015657
TU124919 other downstream 400574 18320056 ~ 18325904 (+) True G100007
TU125009 other downstream 825405 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 2347925 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 4760728 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6945607 24865089 ~ 24865552 (+) True G101061

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_04830811_04848245.mRNA True 2329 mRNA 0.47 7 CI01000049 4829836 ~ 4848501 (-)