RNA id: AMCG00015725


Basic Information

Item Value
RNA id AMCG00015725
length 489
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00015725
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18744887 ~ 18771966 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGCCAGTATCCTATGAGGAGCCTAAACACTGGTGCTCTATTGTCTACTATGAGCTCAACAACCGTGTGGGAGAGGCCTTCCACGCCTCCTCCACCAGTGTGCTGGTGGACGGCTTCACTGATCCCTCCAACAACAGGAACCGCTTCTGCCTGGGGCTCCTGTCCAACGTCAACCGCAACTCCACCATTGAGAACACCAGGCGGCATATTGGGAAAGGCGTCCACCTGTACTACGTCGGGGGTGAAGTGTACGCTGAGTGCCTCAGCGACAGCAGCATTTTTGTGCAGAGTCGGAACTGCAACTACCACCACGGCTTCCACCCCTCCACGGTCTGCAAGATCCCCAGCGGCTGCAGCCTGAAGATCTTCAACAACCAGGAGTTTGCAGAGCTCCTTGCCCAGTCTGTCAACCACGGCTTTGAGGCGGTCTACGAGCTCACCAAGATGTGCACCATCCGCATGAGCTTCGTCAAGTTGCACAGGTAG

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124967 lncRNA upstream 139982 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 140555 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 140555 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 471822 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 813496 17954485 ~ 17956630 (+) True G99932
TU125101 lncRNA downstream 349495 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 361731 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 941554 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 955239 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 955239 19726572 ~ 19775290 (+) False G100241
AMCG00015727 mRNA upstream 53612 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015728 mRNA upstream 87318 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015726 mRNA upstream 311956 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015715 mRNA upstream 701451 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 817057 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015731 mRNA downstream 34756 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015734 mRNA downstream 69313 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015736 mRNA downstream 286729 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015737 mRNA downstream 328887 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015741 mRNA downstream 677573 19448906 ~ 19512925 (+) True AMCG00015741
TU124919 other upstream 444222 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1638377 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2638739 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2968492 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 3455712 15314036 ~ 15314414 (+) True G99475
TU125356 other downstream 1496074 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3908877 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6093756 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7492582 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 7601820 26373153 ~ 26377699 (+) True G101275

Expression Profile