RNA id: AMCG00015727


Basic Information

Item Value
RNA id AMCG00015727
length 5480
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00015727
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18689738 ~ 18716514 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGTAGTTGCAAATCAGAAGGAAGTGCTCAAGCCCCAGTTCTCTGTGAAGGAGGAGCCCCAGGCAGCGGAGCCTCTGAGCCCCAGGCTACCACAGAGCCAGCCCAACTACGTTTTCTGTCAGGAGGGGCCCACAGGGACGCCCGAGCGGCCCATGAAGAGCAGCGAGGGCAGCCCTCTAGCCAAGAGCGGCCTGCTGAGCCAAGACATCAATGTGAAGGTGGCGTCAGAGCTGCTGATGAAGCTCTCAGAGAACAACAAGGAAGCAAGCATCCAGAAGGCCACGGTGAAGGCAGAGCCGATGGAGGTGGACAGCCCCGATGATCTCCCTTCCTCAGCTCACCTGCTTGGTTTCGGCAATTTACCAGCACGGGAAAAGACCGAGCCACTGCCCAGCATCTCGGAGGCCTTGGCCTGCCCTCAGAAGCCGCTCTTCTCCCAGGACATATCGGTTAAAATGGCCTCCGAGCTGCTCTACAAACTGTCAGaaAAAGTTAGCAAAGCTAATGACCACAAAGATAATTGTGTCCTAAATATGAACAGCCCATTCCTTGAAGACCGCTTCAGACAATCACCCTTTAACTCCTGCTCTAAGGATGCTGTCCCCAGCGAACCCGGCTCATCGGCAAGAGCCGCAATGCAAGACTCGGAGAAGGCCGGCCTGGAGCCTGGGAACGGAATGCCCCAGTGGAGGCTGAACGAGCAGCTCTTTCCCTGCAGCGTGTGCGGCAAGGTTTTTGGGAGGCAGCAGACACTCTCTCGGCATCTCTCTCTGCACACTGAGGAGAGAAAGTACAAGTGTCACCTGTGTCCTTACGCAGCCAAGTGCCGTGCAAATCTCAACCAGCACCTCACCATCCACTCCGTCAAACTGGTCAGCACGAACGCCGAGCAGATCGTCAGCGCCGTTTCTGCAGAAAGCAGCGACCGCAAGAACTGCCCTTACTACTACAGCTGCCATGTGTGTGGGTTTGAGACGGAGCTCAATGCCCAGTTTGTCAGTCACATGTCTCTTCACGTAGATAAGGAGCAGTGGATGTTCTCTATCTGCTGCAGCACTTGTGAGTTTGTGTGCAGCGAGGAGACCGAGATGAAGACGCATGTAAATACAGGCCACGCAGGCCTCAACTCTAAAAGTCCCCTCAGCGAGACTAAGAGCACGTCCTCCTCGCTGTCCGTCCTCAGTGACTCCATCAACGGCTCGGAGAGCAGTGAGATCGCCCATGGCAACGAGGAGCTGAAGAGCCTGCTAGCTCCGCCCTCATCGGCAGGCAGCCAATCAAGCTCAGGCAGCCACTCGGGATCCggaacagaagaaaagtctGAAAAAGGTTTTGAGTGCGTGTTCTGCAACTTCGTCTGCAAGACAAAAATGATGTACGAGCGCCACCTGCAGATCCACTTGATCACGCGGATGTTCGAGTGCGATGTGTGCCACAAGTTCATGAAGACCCCCGAGCAGCTGCTGGAGCACAAGAAATGCCACACCGTCCCCACTGGAGGGCTCAAGTGCCCCTTCTGCATCTACTCCACCAACCGGCCCACGGCGATGGAGTGCCACCTGAAGACGCACTACAAGATGGAGTACAAGTGCCGCATCTGCCAGAAGGTCAAGTCCAACCAGCTGGAGCTGGAGATGCACATCCGTGAGCACCGGCTGGGCAACCACTACAAGTGCGAGCAGTGCGGCTACCTGTCCAAGACGGCCAACAAGCTGATCGAGCACGTGCGTGTGCACACGGGCGAGCGGCCCTTCCACTGCGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAACCTCAACCTGCACAAGAAGCTGAAGCACGCGCCCCGGCAGACCTTCAGCTGCGCCGAGTGCTCCTTCACCACCACGCACCCCTTCGTTTTCAGCCGCCACGTCAAGAAGCACCAAAACGGCGAGTGCCCTGACGAGGACCCGCACCCCCAGTCGCGGAGGGGGAAGGAGGCCTTCCTCGTAGGCAgtggcggcagcagcagcagcagcgggaGCAGCAGCCCCCTGCTCACCCTGTCCGCCTCCCAGGCGCTGCAGTCCGTGGCTCTGTCCTTCACCGGGAAGCAGAAGGACGCCAAACCGGTTCTCCACTACCTTGCGGCGAACGGCATGTCTCTCTCCTCGCATTACGAGAAGTACAGGAACTGCGACCTGGCCCACCTCATCCCCCTCCCCACCCTGTTCCCCCCAAGCCAGTACGTGGGAGACGGCACATTCcacccttcctcctcctcctcctcctcctccagactGCGCCCCGCTGCCTCCTGTCCCtcgccctccctctctccagacTCTCTCAAACACTCCTTCCTCGCCTACCTGGGACTCACCGAGAAGGCGAAGACCGTGTGAAGCTGCCTCACACCCTCCCTGGACAGTCGCGAGGCAAGCTGTGCCCGCTGCAATAGGACCTCTCCCACCGAGTTATCATAACGTGCTGGATATAAACGTAGTCGaggtagaaaaaataaaaattaaggcTGTTTGTGCTTAATGCATTTATATCAAAGCTGCTTTATATTCAGTTATAATACTTTTAGTTTActtacctttctttttttacaaacaGGAACCCACTGCAttacctgaaaaaaataaatgggacaAAAAGAAGTTTGAtatgaacaagaaaaacaaaggagGAAAGGGGCGGAGTTTGATAGTGTTGCATACATTCGAGTAGGGATTGTCTTTCTCAAAGCATTAGAAAGCATGCTTTTCTAAGTGTTCGGACTTGTCTAGGTGTTAATATGGGCTTAAAATGAGATGGAAAACTATAACAAGGTGGTTCCTTGATgctctgaagaaaaaaaaaaaaacgaaaaaaaactCCACAGCCAGTTACGCTGAACTGTTATAAACTGTTTCCAAAGCACCTCAAGCCCTTATCAGTCATATTGTTTTGTAGTGTCTCCCTCTGGCTTTGCTTAAAGGTGGCATTGCATGAAGTCTTAAACTATCTTGCCCCCATTTGGACTATTTCCCGACACTTGTGAACATctaatatacatattgtatgtCAACTCATTTGACTTATGAAGCACTACTCCCTCTGAAGTGTGTCTTCGTTTTTTTTAAGACCTTGACCGAGTTAGAATGCTccttttgaattgcaaaattATACCCTAGACCCAACCACACGCGCCAAACAAAACGAGTGCCTGTGTGCTACAGCAGTAAAAAAAAGAGGTGAGATTTTCACTCGGGCAATTGCAATCATGTGCCAGTCTTTTCCAATGCGCTCTGTCCTCCCGGTATCTGGATGTAAGGTTTCTCGGAGGACAGTGTACGATACACTCGTTACAGAGGTAACACAACGGGCGATAGGTTTGCTTAACATGGCCTTGTCCTCCTGGAATCCAGCTTCTTGGTGTCCATTttggagttgtttttttaattctttttaataattgttcCAAAATGACTttgttgaatgtatttgttttttaaatgcagaggcGGGGGTAGGTGTGCCGTTTTGAGTCTGGTTAAGATTTGATCAAAATCATAGCATTTTGGTGgccttctgtgtttgtgtgaactatgattttatttattagcattttaataaCTTTAGATATCCTATCATGACGTCGGATTCAAAACGCAGCCTGAAACTGGCCCATGGGTGCAGCGGTAAAATGTCCATTCCTTTATATgtagatatgtatgtatatgtgtgtgtgtgtgtatatatatttgcagtAGCCTccagatatatacatacatgtatatacataatacatatcattaaatcttgtttttaagGATGTTTGCAATGCAGATTTCTGTATCCTCTTGGGTATTTTGACTTTTAACTTTCATTAAGACAATTGCACTTAATATCATCAagtctaaaataaaatgcacttaaTATTCCCTTTACatattgtataaaaatacaagaaCCTGGGTTTGCTGTTCTGTACAGTACATTTGATTTTACCTAAAAGGTAGTCTTATAAAGcatcacacacaatcacatgtatgtctttttttgtattgaaaaaactaaacgtTACTTTGTACACGTACCTTTCCGGTAGTGCAGTGGTTCCTATGTGTCTAACCCTCTATGGAATGAAGAAATACCATGTACATAAAGTCCTCTGTTGTTTGATTATGCGATAAATAGATGGTAGAGGTTGGAACCTGGGCAAAAATGCTCAGGCTAAATGAAAACAGGCAGTTTTGCACAGTGCTTTAGTCTTGCactattttatatttgtcattAAGAATACAAATTCCTACAAATTTAAGGAAGGCATACATGGCGTTATCTACGTATGCTTACGGAAAAAGGCAAAATCACttctttaatttacatttgtagaTGGGAAGGAGGGCCTACATTTGGCACTTGCATTTCCTAagtggtctttttttttctttcttatttgtAAAGGGATTTTGAATTCACACCAGTTTTATTTCACACGTGTCTAtgtttgattttagatttttaaattctctctgaaatgaaaaaaaaaaaaaactttttaaaggCAGGTTTTAAAGACCAATAAAATCCACACAGGAAACGGACTGCGCCATTAGGAGTGCGTTTGTGCGTTTCTGAATATGAGGGTATCAGTCTTCAGTTGCACCCCCTGGAGGGTTTGCTATGTACAAGTACAGCATTCAGTCCTGGTGCTACATTATTTCAATAGGGGGTGCTCCCGCAAAGCTAAGTGAAGAACTCCCTATAAATTTGCATTATCTTTTATACTCTAGTGCCACTTGGTGGAAGGGAACAGCCTGAAATACCTGAGAATGAGTCAAACTGATTTTCAGTGTCAACGCTGAGACGCGTGTCAGCTGACTGACaccattttttgttgtttttttgtctgccTTTGAATATATCATGTTATCTAAAACGACTGCACTTTCGTACAGTGTTCAATGGGAAAACCTGACAGGAAATTGGTCTGTCCTTTCGATACCAGTATTTCTAAGCACTTGATTCAGCTATTATTTGCCTAAATGTAAGCAGCACAGTGATTTAAAGTTATTGCGTGACTACCTTTAGCACTTCGGAAGATGCATGAAATTGCAAACTCTAGTTCTTAGCACTTTTTTTTCGCTCCTTAAgactgactttttatttttggtttgcatTTAGTCATGCAGTTATTTCTCTGCACTCTCTTCAGTCCATGTATAGctttatttttgctgtattttgttaCTCAAAGCtcaatttgttttgcttggttttccttttgttttttaggtttttattttggcacacagtaaaaatgttatgtactgtataaagcttttttttattacttcatCTTTAAGGCTGTACAGGGTTGTTTGTGACAGTAACTGGTAATTAGatctttttgtacttttttggttttgttttgttgttttctgcattatttttatgttcagaTTGCCAGTTCTCAATGTAACAGGATTTGGAAGTAAAGCTTACTCCAGCTATTACA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124967 lncRNA upstream 59594 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 60167 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 60167 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 391434 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 733108 17954485 ~ 17956630 (+) True G99932
TU125015 lncRNA downstream 41548 18758062 ~ 18844449 (+) True G100082
TU125101 lncRNA downstream 404314 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 416550 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 996373 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 1010058 19726572 ~ 19730564 (+) True G100241
AMCG00015728 mRNA upstream 6930 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015726 mRNA upstream 231568 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015715 mRNA upstream 621063 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 736669 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015716 mRNA upstream 770256 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015725 mRNA downstream 53612 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015731 mRNA downstream 89575 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015734 mRNA downstream 124132 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015736 mRNA downstream 341548 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015737 mRNA downstream 383706 19100220 ~ 19108988 (+) True AMCG00015737
TU124919 other upstream 363834 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1557989 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2558351 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2888104 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 3375324 15314036 ~ 15314414 (+) True G99475
TU125009 other downstream 28373 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 1550893 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3963696 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6148575 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7547401 26263915 ~ 26264308 (+) True G101248

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002222 False 7938 mRNA 0.48 14 NC_007112.7 36017867 ~ 36151377 (-)
grasscarp (Ctenopharyngodon idella) CI01000049_04380746_04381576.mRNA True 3957 mRNA 0.44 1 CI01000049 4378852 ~ 4382808 (-)