RNA id: AMCG00015728


Basic Information

Item Value
RNA id AMCG00015728
length 2259
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00015728
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18677818 ~ 18682808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGCAGATGTAGACAGAGTAGAAGAAGAGGAGGCAGAAGAGGAGAATGTGGAAGAAGATGGCTGGTTTGGGAATGCTTCGGACACTCCCTCTGAGTCATCCTTTGGGGACGTGCAGGACGAGCTCAGGATCTCTCCTGATGAGCACCAGCAGGAACAGGACACATCTGCGGAAAGCTCCATAGGCTGCCCCACTCCAGTCCATGGGAACTCGCTGGAGCTCCTGGGGTTGGACAGTGAGCCCTTTAAGCCTGGGAGCTTCTCTGCCAAGGACCCACTGTCCTCCGTGGTGTCCTCGTTGTATGCGGACGCATCTCAGGCTCTGGGGAAGCCACTGAGTAGCAATCTGAGGCGCCTCCTAGAAGCAGGCTCTCTCAAGTTGGACGCAGGTGACCTGGCCGCCAGAGGACGAGGAGGGGATTCGCCTCCTGTCAACTTGGCCTCCACCTTGACCCTCTCGCCCTCTTCCCATCATGCTCAGCAGTTAAGTGCCCTTGCCCGGAAACTGGCCAACACCACCTCCAGCGCTGCCTCCCCAGCCTCCACAGCACCCGCGAACCCCATCAAACAGGAGCCATGCGACCCTTTCGCCCCCAGcatgagcagcagcagcagcgctgGGGGCAGCACCTGCGGAGGCAGCTTCGTGTGGGTGGGCGGCCCAGAGAAATGGCCCCCCGCTAGCTGTTCAGCGCCCaacagcggcagcagcagcctcTCCCCGGACTCTGCCATCCAGAAGCTGAAAGCGGCAGCGAACGCGGTGCTTCAGGACAAGAGCGCGGTTGCATCATCaacgtcctcctcctcctcctcctcttcctcttcctcctcttcctcctcgtcctcctcctccgctGCAGCTGTAGGGGGGAGGCCTGAGGAGGCGGTGCGCTTCGATGCCTTCGCCTCCCCATTCAGCCCGCAGTCAGCCAGCTCCACGCTAGCCGCCCTGTCCAAAAAGGTCAGTGAGAGGGGGCTGTGCGGTGGGGGCCAGGTGGACCACCAGCCCCCAGCCAGCTCCTTCCTCTCGCTGGTCTCCATGACCTCCTCGGCAGCGCTGCTCAAGGAGGTGGCGGCCCGGGCAGCGGGGAACCTCCTGGCGGACAAGAAGGAGCCGCCGCTGGTTCCAGGACCCCCAGAGGATGTCAAGCCCCTCCTGGACAAGAACCAGAAAATCCACACACCCTCTCAGACGCTGGAGCTGCTACTGCCATCACCTACAAAGGGAAGAACTAAAGCCAGCAGTCAAGGAGCTTCTCCTGAGGACGGGGGAAAACCCTTTCAGTGCCCTGTGTGTGGCCTGGTCATTAAGAGGAAGAGCTACTGGAAGCGACACATGGTGATTCACACCGGCCTCAAGAGTCACCAGTGCCCTCTCTGCCCTTTCCGCTGTGCTCGCAAAGACAATCTCAAATCACATATGAAGGTCCACCAGCATCAGGACCGAGGGGAGACCTTCCAGTGCGAGCTCTGCCCCTTCACCTCCTCCCGCCACTTCAGCCTCAAGCTGCACATGCGCTGTCACCAGCACTTCCCTCGCACCGAGGTCAAGGTCAAGGAGGAGGTCACGACAGACACCGAGGGCGAGGGCTCAGTGCTGGGCGACTCGGCTGGTCCGGGGGAACTCAAGGGGGCCAGCCGGAGCTCCCCGATGCCCCAGGATGCCAGGTTGGGAGCCTCGCCCGCAGACTCCACCAATCACATCCACATCAAGGAGGAACCCCAGGAGAGGGATGTGTCTTTGCTGCTGCCATTCCCCCTCTGCAGGGAGACCCCAATCAACAGTAGCGCTAAGCCTCTGGAGCCCGGAGGAGTGAAGCCCAGCCACCCCACCGCCGCTTCCCTCTTCAGCCCTGACATCACCACTAAGACAGCCACCGACTTCCTCATTAAGCTCTCAGGTGAGGGTGAGCGTTCACCACCGTGGCTTGCGGATGTGCCTTCACTCCGGAGGAGGACCTTGGAGTTGGCGCACATTCAAGGAGCAGAGGCTGCTGGTCTGGCAGCCTTTTCAGTACTGTATCTCTCCATTGCGACGATGATCTCAGCCAAGCCGCAGGACTTCTCCTGCCCTAACAGACAGTGTAGACTCATGGAGGTGCTTTTATGTAACGCATTTGTGGCCAAGGCCCAGGTCATCAGATTGATCAACTCCAGTAGCCTCCTGTCACTGTACACTGCACAGCTGGTGGAGAGAGTACTTGGGGACGGTGACACCATTCAGGTCAAGAGGGAACCTAGTGCTGCAGTGGACTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124967 lncRNA upstream 47674 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 48247 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 48247 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 379514 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 721188 17954485 ~ 17956630 (+) True G99932
TU125015 lncRNA downstream 75254 18758062 ~ 18844449 (+) True G100082
TU125101 lncRNA downstream 438020 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 450256 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 1030079 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 1043764 19726572 ~ 19730564 (+) True G100241
AMCG00015726 mRNA upstream 219648 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015715 mRNA upstream 609143 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015714 mRNA upstream 724749 17945489 ~ 17953069 (+) True AMCG00015714
AMCG00015716 mRNA upstream 758336 17890492 ~ 17919482 (+) True AMCG00015716
AMCG00015709 mRNA upstream 1230157 17416375 ~ 17447661 (+) True AMCG00015709
AMCG00015727 mRNA downstream 6930 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015725 mRNA downstream 87318 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015731 mRNA downstream 123281 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015734 mRNA downstream 157838 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015736 mRNA downstream 375254 19058062 ~ 19063854 (+) True AMCG00015736
TU124919 other upstream 351914 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1546069 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2546431 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 2876184 15796950 ~ 15801634 (+) True G99541
TU124222 other upstream 3363404 15314036 ~ 15314414 (+) True G99475
TU125009 other downstream 62079 18744887 ~ 18771966 (+) True AMCG00015725
TU125356 other downstream 1584599 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3997402 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6182281 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7581107 26263915 ~ 26264308 (+) True G101248

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_04386375_04434840.mRNA True 3360 mRNA 0.56 11 CI01000049 4386375 ~ 4434840 (-)