RNA id: AMCG00015731


Basic Information

Item Value
RNA id AMCG00015731
length 3612
RNA type mRNA
GC content 0.53
exon number 23
gene id AMCG00015731
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18806089 ~ 18828015 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCAATCGCACCCGCAAATAAACTGTCAAATCCCGCACAAACCTACCAAACAAGGCAAATCATGAGGGAAAGTGAGAGCCGGGCTCAGACGCCGGGGCTGCGGGATATCAATATTATATAGTAGAAGTTATTGCGCAGATTGGAACAGGTTTACCATTAAGGTGCGGGGAAGTACCGCGATGCAGACGCGCGCAGAAGTCTGTGCGCCCGCGTTTGTGTTTGAAAAGCGAAACAAACTCGTTTTAAGGGCATGAAGATTTCCTGGATTGCCCGTCGCACCGTGTAAACCGCCGTGTGAGCTGCTGccaggggggagaaaaaacaccAGGGCGACCAAAATGGCAGGGAGGACACCACAACAAGACGAGCAGCGCAGCAGCAGCAACGCCGAAAAGTTCATGGATGAATACCTGCAGGCTCTGGGGCTGTGCCGAAAGAAGATCGCCAAAGACGGGTCCTGCTTGTTCCGAGCGGTGGCCGAGCAGGTTTTACTGAGTCAGAGCCGACATCTGGAAGTGAGGCGTACCTGCGTCGATTATTTGGCAGAGAACAGACAGAAATATGAAGCGTTCATTGAAGGGAGTTTTGAAGAGTATTTGCAAAGGCTGGAGAATCCACAGAACTGGGTTGGAGAGGTTGAAATAAGTGCTCTGGCTCTCATATACAAGCATGATTTTGTTATCTTTCAGGAACCTGGAAAACCACCAGTTAATATAACTGAAAACAATTTTCCTGACAAGGTGCAGCTGTGCTTCTTAAATGGGAATCATTATGACAGTATCTACCCAAAAGAATTTGTGCAAGATGCAGCCCTTTGCCAGTcCATTCTGTACGAGCTGCTTTACGAGAAGGTCTTTGGGGTGGATCACGAGACATTGGCCTCCAGTCTGCAGAGCTCTAATGGGACGGACGAGGATTTCACTGAGAGGGAGGACAGTGATGAGTCGGATTTAGATGGAGAGGAGGCCTACTGGGCTGACGGAGAAGATGATATCACTGAGATGAACAAATTCAGGTCATTTCAAGGTGATAAAGTTCACAAGCCACATCATTCTGGTTTCCACTTGCCCCAGAGAGTCCTGAAGTCACTCAACCCCTCCTTCTTCAGAAATGTTGAGTATGATGTCTGGCAGAGGTCTAAAAAAGCCCAGCAAAATATGGATTACTGCATTGCTGCAGGAATGCAATTCCACATTGGAGACAAATGCAAGGTGTCCCTGGATCACAGTGGTAAATTCTATAACGCATATATTCAAGAGGTTTTGCCCAACAATGGCCCTGTGGTGGTGTTCGTGGAAGAACTTGCAGAAAAGCGCTCCATTTCACTGAGGAACATCAGGCCTTCCTCAGAGGAGCCCCTGCCCTGGAGCACCGTGGCAGAGAAGGGAAAGAGGGCCAGCACGGTCAACGGACACGGGACGGACCGAGACAGTCGAGGAACAAGGAAGTTGACAAAAGCAACTGCAAAATCTCCACTGGCACCTTCCACCTATATTCAACCAGCTGGTCAAAGCAGAGCTCAGCAGCAGCTGCCACCCTGGCCCCTAGTCCAGTCCCAGCAATCCCCTCCAGAAGACAGAGCAGGAGGCAAAGCCTTCTCCACCAGGAAGTGTGATCTGGGACTTCCCTGTCCTAAAGGCCTGACAGATGAGCGCATGGCTAAAGAGGCAGAACAGGAGTCTCAGGCTCAGTTTGACATTTTGCAAAAGGACGAGGAAAACTTCCCAGCCCTCAGCAGCCAGAAGGTTTGCCCGGCTGCCACTCAGACCAGTGCGGGCCAGAAGAATGTGAACCCTCAAACCAGTGACAGAAAGGGCTCCAGACGACGGATGGAGGCACAGGAGCAGCCCAGGGAGAGCGAATCAAAAACGCCATCTCATGCATGTGTCAGGAAAGTTGAGAAGAATAAACCTTTGGCTAAAAACACTGGGGAATCGTGCCAGAAGAAGATGCTTTCACCTCCTCCCCCTGAGCAGAAGCCAAGTGTACAAAACCCAGTCTCTCCCCAGCAGGGTCTAGTCCAGCCCTTGTACTCCCCAGGACTACCTAGCTCAGACCCCACACCTACCCCATCTCCTCCTGCTTCTGCTGGCCCTCAGACTGCCACCCCACCCAGTAGCCTCACCCCACCGGCCCTGCCAGCTGATCCACCACCATACGAGACTGCCACCAGCTGCCCTGCAGTGCCTCCCCCACCTGCCATGGCAGAGCTCATCTCACCGGCTCGGGTGAATGTCTCCCCCATGCCCCCACCTCCCGTCCATCTGCCTCCTGTCAGCCAGCCATCGATGCCCTTTCCCCAGATGCAGTTCCCCTACCAGGACCCTCTGTATCCTGGGTTCCCTTTGAATGAGAAGGACGAGATCGTTGCAGCACCATCATACTCCTATTGTAGAAATGGGGACGATCTTCCCAGAGatAAATGCATCCTGCGATTCTTTTTTAATCTGGGTTTAAAggcgTATACCTGTCCCATGTGGCCACCCCATTCCTACATCCTCCCCCTGCACCAGGCTTATCTGAATGTCTGTGCAATGCAGCCCAAGGTGCCGGATCCTGCCTCTTACACCCCGCCATGGTTCCCAGAGACTCCTGCTGCCGCCCATCGTGTGAACTCTGCCCCCCCAGCCAACACCATGCCGATGCAGGAGAACCCTGGCTATAACCTCCCTGGTCCAGCTGGTGTGAGAGCTCTGGGGAGGCTGCCATGGCCAGGGCAAGGGCACAGTCAGTACATGGGGGGCTACACGGCTCCCACTCCACTCTTTTCCCCTATCCCTTTGAGATGCCAAGTCCCGCAGTTTCCTAGTGGAAACTCTGCCATAGCTGAACCCCCGCAGATCAACCCTGCCAATTCCCAGGAGGGTAAAACCGGGAGTCTGGGCTTCAGTGAAAGGGTTTCCAGTGTGCCCACCACAGCGGCTAACATGGAACCGTATACCGATCCAAATATGATTATGACCCTGAAATCCTCTGCCGCAGAGGTTGATATCACAGAAAAGGCTGCCGAGGATGAGACATTCGGAGATGGTACTGTAGgggctggagctggggctgagATGGCAACACCTCCACAGCTTCTGGCTGAAGAGGTATCTGCCGCAGGGTTGAAACAGAGTGCACAAAGGCCACTTTGCAAGGAAGGCAACAGTTTAAGTTTAGATAATCGCCATGAGGCAAGTGCGATCAGGGTTAGCAATGTCCATGAGGCAGTGGGTATCGACAGGGAACTCGAGAATCCCAGAGAGACTGAGGAGGCGAGTCAATGGTCTGAGCAGGGCACTGAGAAGTCCTCTGGCGTCGCACATCTGCCCGGAGAGGATGTGGGGGAATACGAGATCAGCGATACCATGCCGAGGAGGGGCAGGTCCTACTATGGCCGCTCCTACAGGGGGAAGAGAGGCTTTGACGACGGGCAGGGCTTTCGGGAGACTAGATCAAGGGGTCAGGGAAGGGGGTCTCGCAGGTGGAGAGAGTCAGATGATGGGCGAGAATACAACTACAGGGAGGGGAAGTATGGAGAGAGGAAGTATAGAGAGAAGTGGGATCACCAGACTAGTGTACATGGAGAGAAGAGTAGCCATTTTAGAGGCTCCTCTGCAGAACCTTGA

Function

GO: NA

KEGG:

id description
K13718 OTUD4; OTU domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124967 lncRNA upstream 175945 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 176518 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 176518 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 507785 18297039 ~ 18298304 (+) True G100005
TU124830 lncRNA upstream 849459 17954485 ~ 17956630 (+) True G99932
TU125101 lncRNA downstream 292813 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 305049 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 884872 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 898557 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 898557 19726572 ~ 19775290 (+) False G100241
AMCG00015725 mRNA upstream 34756 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015727 mRNA upstream 89575 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015728 mRNA upstream 123281 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015726 mRNA upstream 347919 18452377 ~ 18458170 (+) True AMCG00015726
AMCG00015715 mRNA upstream 737414 18057882 ~ 18068675 (+) True AMCG00015715
AMCG00015734 mRNA downstream 12631 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015736 mRNA downstream 230047 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015737 mRNA downstream 272205 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015741 mRNA downstream 620891 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015742 mRNA downstream 812031 19640046 ~ 19671896 (+) True AMCG00015742
TU125009 other upstream 34123 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 480185 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1674340 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2674702 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3004455 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 1439392 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3852195 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 6037074 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7435900 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 7545138 26373153 ~ 26377699 (+) True G101275

Expression Profile