RNA id: AMCG00015736


Basic Information

Item Value
RNA id AMCG00015736
length 5121
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00015736
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19058062 ~ 19063854 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGGTTGTCTTCTTCACAGGACTGGACTTTCTAAGGCAGCTGCAGTTTCGAGGTGCCTCCTTGCCCTCCTTGCATTCAGCTCCAGCTTGTCAGCCGACGGGGCAGAGAATTTTGAGCCTGCTTTCCTCTTCGGGCCCAGGCCAGGACCTGATTCTGACTCTATACTAGTTGCCAACAATGGGGTGAGGGTGCCTTTTGGCAGATCTGTTTATTTAGACCCAATCAATGACCTGGTGACTGAAGTGCAACCTGGAGACCGGTGCTACATCACAGTGCTAGAGAATGACCCTCTGGCTCAGAGACCGGGCATGCTGTCTCCGAAGAGATTCCCCTGCACTTTCGGGGCAGAGGAGGTGAAATACACCCACTTCGGATCGAGAAGCCCCAACAAGGACAGAGTGAGGCTGCAGCTGAGGTACGACTCCCAGACGGACACAATCATCATTCCTTTGCTGCTGGAGGTGGAGGTGGTGTTTCAGCAGCTGGAGATTTTAACACGCAACATGCCTCTGGTCGTGGACAAGCTGAATGGCATCAGCAATCCCATTGAGAAGAAGGGCTTGGAATTTGCCTTTGATGGCAGTGCCGAATCCTGCAAAGTCACCACCTTGATCAGCGCAGGAGGTCTCCCCAGGTATGGCACACTTTTAAATTACACCGCCAATGGGCAGATGATAGACTGTGATGCTTTTGTAAACCTAGGCATTCGCTACAAGCATACCTCCACCACCAGCTCCCCAAACAGAGACTATATCCCCATGTTGGTAGAGCTAGTGGATAAAGAGGGAAACACTATCAAGCAGGAGCATTTCCAAATCATGGTTAGAATTAAAGAAGGGACCGAAAACACAGCCCCTAAGCCAAGTTTTGTTGCTATGATGATGATGGAAATTGACCAGTTTGTGATGACAGCTATCACCAATGATATGCTGGCTGCTGAGGATGTTGAATCTGGTCCAGATGACTTAATTTTTAACATCACTTCGCCCCTGGGTCATGAGCAGGGCTACATTATCAGCACCGATGACCAAAATCTACCTATTACATCTTTCTACCAGAGAGACGTTAAAGATCTGAAAATAGCCTATAAGCCTCCCTCTGCCGATTCTGGCTCGGAGAGAATTTTTCAAATTGAGTTTGAAGTAGTCGACACTGAAGGCGCTGTCTCTGATGCGTTCGCCTTCATGATTGTTGTGAAGCCCATGAACACTTTAGCCCCGGTGGCAACTAAAAACACGGGACAGCTGCTGTTTGAGGGACAGTCAAGAGCGCTCTCAAGCACCCAGAATTTAGAAATCAGTGACGAAGATAATCTTGATGATGTCAGAATTACAGTTATTGATGGTTTAAAGCATGGTGAACTGACAGTGTTGGGAGCCCGTCGAAAATTCTTCACCCCCGCCGATTTGGATGCCGGGGTCGTGGTATACCAGCACGACGGCAGTGACACTTACAGTGACAATATAATTTTCCGCATGACTGATGGCAGCAATGAAGTTGAGTTTTTGTTCCCTATCACCATTGCACCCACTGACGATGAGCCTCCCATTATAAATACTAACACTGGGCTTGTGCTTTTCAAGAATGAAATCATGCAGATCTCACCCTTCATTCTAAGTGCCACAGACATTGACTCAGAGGACTCCACCATTAAATTTATCGTGGAGCCTCCTTATTCAACACTGGGTGAACTGCTCCTCCGACAAGCCGAGCAGCCCTCAGATTTGTCTGCCTGGAAGTTCAGTGACAGCGAAGAGATGTTTGAGCAGGTGGTGACGGAATGGTTTCAGCAGGACATCCTGGATGGGAAGCTGTTTTATCGTCACATTGGGCCTCACAGCACCACCACTGTCATGGATAATTTTGTGTTCCGGGTCCATGATGACAATGACCCCCCGAATCAGTCTGGGGAGCACACGTTTGCAATTAAAATCCATCCAGTAGATGACCTCCCTCCAGAACTTTACCCTGGCACTGCTTTATACATGACAGTGCAAGAATACGAATTGACCCACTTTAAAAAGAAGTTTTTGCGTTACACTGATCTGGATTCAGACGACCGTGATCTGAAGTACACCATCTCTAGGCCTCCAACTGATACAGACGAAAACAACCCCATCCCACTGGGCGAGATAGTGCTGACTGAGAGCCCTGACACTGTCATTACAGAGTTCACACAAGCTCAGGTCAATCATCACAAAGTGGCGTACAAGCCCCCAGATCAGGAACTGGGCATCACACCAAGAGTAGTGCAGTTCACTTTCATTGTGGAGGACACTGCTGGAAATTCAGTGAATGGCCTCTTCACAATTTTCTTGCAGCCAGTCGATAACAAACCCCCCCAGATCACCAACACTGGTTTTACAGTGCTGGAGAGAAATACTTACATCATAACTAAAACTGAGCTCGATGCAACTGACCAGGACACAGATGATGATAAAATTATATTCACATTGACCCAGGCTCCTCGATTTGGGCTGCTACAGTATCTGGGCATCGATATGTCTGTGGGAGAGACATTTGTACTTGAAGATATCGTCAGTGGCCACATCGCATATGTCCATAACGGCGAGGAGTCCACTAGCGACACAGTAAAACTTGATGTCAGTGATGGATTTCATGAGCTGCCTATCATTATTAAAATCACTGTGAAACCGGTCGATGACGAAACTCCAACCATTATGCTCCCATCCGGCCTGCTGGGTTCCTCCATTGATGTCCTGGAGAATGGAGCCACAGAGATCACTTCCAATGTGATTCAAGGCAGAGATGAAGACACTGATGACCTCATGCTCACATTTATAGTTGAGGAGCCACCAAAGTTGGGTGAAATTATGGTTAATGGGGTTGTCTCTGAGAGATTCACGCAGCAAGACATCATCAATGGAGGTGTCGTTTATGCTCACACGAGTGGGGAGATCGGGCCTTTTAAACAGCACGACTCCTTCAATCTCACCATCTCTGACATGTCTGATGAATGGGTTGTCGGTGGCAACAAAGTCCAAGGTGTCAGGGTGCATGTCACTATTCTACCTGTTGACAGCGTGCCTCCCATTGTCATTGTTGGCGATCAGTTCACCGTGCTTGAAGGAGAGAAGAATGCCATCACAATAACAAACCTCCAAGCTGAAGACGTGGACACAGAAAATGACGACATTCTGTGCACCATCATTGTCCAGTCCACATCTGGTTACATTGAAAACATATCTCCAGCCCCTGGGTCTGAAAAGTCCAGGGCAGGAACTGCCATCACGGCCTTCAGCATTAAAGACGTGCGTCTAGGTCACATTTATTACGTGCAGAGCATCCACAAAGGTGTTGAGCCAGTGGAAGACAGACTCACGTTCCGCTGTTCTGATGGTATCAACTTCTCAGAGCGTCACTTTTTCCCCATCGTTATCATTCCAACAAATGATGAGAAGCCCGAAATATTCATTCGTGAGTTTGTTGTCATGGAGGGCATGAGTCTGGTCATTGACACTCCCATTTTGAATGCAGCCGATGCAGACATTCCAGGGGATGATCTAGAGTTTGAAATAATTAGCCCTCCCAAACATGGCAATATTGTTCAGCAGCTTACCACAGGTACTGTTTCAGTTATTCATTTCTCCCTTGAGCAGATCAAGGAAGGCTCTAACATTGTCTATGAGCATGATGACTCTGAAACCAAAGAAGACAGCTTTGAGGTCAGACTTACAGATGGAAAACacactgtggaaaaaaaagttcTCATCATGGTCATTCCAGTGGATGACGAGACTCCAAGAATGACAATTAACGACGGACTAGAAGTTGAAATCGGGGAGACAAAAATCATCACCAACAAAGTCCTTAAAGCAACAGATTTAGATTCTGAAGACAAGAGTCTGATGTATATAATCCGTTACGGACCAAGTCAAGGCTACCTTCAGCGCATCACCAAGTTTGGAGACGTGCTGGGAAACATAACTGTTGAAATGAACTTCACCCAAGATGACATAGACAAAGGACTGGTTCAGTATGTCCATACAGGCCAGGAAGGGGTTCGCGACCTTGTCAAGTTTGATGTCACGGATGGGATTAATCCGCTCATTGACAGGTACTTCTATATTAGCATTGGCAGCATTGACATGGTCTTCCCTGACGTCATTAACAAAGGTGTGACCCTGAAGGAAGGGGGTAGAGTGACCCTGACCACTGATCTGCTGAGCACCACTGATATCAACAGCCCTGATGAACACCTGAGCTTCAGCATCACTCGCGCCCCCAGCCGTGGACACTTGGAGTGCACTGACAGACCTGGAGTTCCCATCACCACCTTCACTCAGCTGCAGCTGGCAGGCAACAAGATCTACTACATCCACACCTCAGACGACGAGGTGAAAATGGACAGCTTTGAGTTTGAAGTAACAGATGGTTACAACCCCGTGTTCCGCACTTTCAGAGTGTCCATCACTGATGTGGACAATAAAAAGCCGGTACTGACCATCCACAGCCTGGTGGTTGGCGAAGGAGAGCTAAAGCTGATCACTCCTTTTGAACTCACCGTGGAGGATCGGGACACGCCCGACAACTTTCTGCGTTTCACCATCACCCAGGTGCCAGTCCATGGGCAGCTGCTGTACAATGGCACCCATGCTGTCACTAGCTTCACCAAACAAGACCTAAACGAGAACCTCATCACCTACAAACATGACGGGACCGAGTCTGGTGAGGATAGCTTCTCCTTCACTGTGACGGATGGCACTCACACAGAATTCTATGTCTTCCCCGACACTGTCTTTGAGACTCGTAAGCCCCAGACAATGACCATCCAGATCAACTCGGTTGACAATGGCGTCCCCCAGATAGTCGTCAACAAGGGCTCTCCCACGCTCCGGGTCCTGCACACCGGCCACCTGGGCTTTGTGATCACTAGCAAGGCTCTGAAGTCTGAGGACCGGGACAGCCCACACAATGTCCTCAAGTACTGGATTGCCGAGGCTCCTCAGCATGGCTACATCATCAACACGGCCCTGGGGAACGACAGCGTCCAAACCTTCACTCAAGCTGATATTAATGAGATGAAGATCTGTTATGTGCTGCTCGACGGGGAGAATGCTACCAGTGATATATTTTACTTCACAGTTGAAGACAAA

Function

GO: NA

KEGG:

id description
K23380 FREM1_2; FRAS1-related extracelluar matrix protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125015 lncRNA upstream 213613 18758062 ~ 18844449 (+) True G100082
TU124967 lncRNA upstream 427918 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 428491 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 428491 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 759758 18297039 ~ 18298304 (+) True G100005
TU125101 lncRNA downstream 56974 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 69210 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 649033 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 662718 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 662718 19726572 ~ 19775290 (+) False G100241
AMCG00015734 mRNA upstream 206784 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015731 mRNA upstream 230047 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015725 mRNA upstream 286729 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015727 mRNA upstream 341548 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015728 mRNA upstream 375254 18677818 ~ 18682808 (+) True AMCG00015728
AMCG00015737 mRNA downstream 36366 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015741 mRNA downstream 385052 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015742 mRNA downstream 576192 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015744 mRNA downstream 640569 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015746 mRNA downstream 698947 19762801 ~ 19791302 (+) True AMCG00015746
TU125009 other upstream 286096 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 732158 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1926313 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2926675 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3256428 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 1203553 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3616356 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 5801235 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7200061 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 7309299 26373153 ~ 26377699 (+) True G101275

Expression Profile