RNA id: AMCG00015737


Basic Information

Item Value
RNA id AMCG00015737
length 3528
RNA type mRNA
GC content 0.58
exon number 18
gene id AMCG00015737
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19100220 ~ 19108988 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTCACTGTACTTTGGAGACCTGGAGTACACAGTGGATGAAAGCTCTGGCTACGTGGAGGTGCGTGTGTGGAGAACAGGGACAGATTTGTCTAAGACAGCGACCGTCACTGTGCGCTCCAGGAAAACCGAGCCAGTCTCAGCAGAAGCTGGTATTGACTACGTGGGGATTAGCAGAAACCTGGATTTTGCCCCTGGGGTGACGATGCAGACCTTCCGCGTGACCATCCTGGACGACCTGGGCCAGCCGGTGCTGGAGGGGCCCGAGAAGTTTGAGCTGGTCCTCCGAATGCCCATGAACGCCGTCCTGGGAGAGCCCAGCAAGACCATCATCACCATCAACGACTCCGTCTCAGACTtacCTAAGGTCCAGTTCAAGGAGCCCCTCTACACTGCTGATGAGGTGGATGGGCAGGTCAGTGCCATTGTGTACCGCAGTGGAGATATTAGCTATAAGTCCACTGTGAGGTGCTACACTCGCCAGGGCTCCGCACAGGTCATGATGGACTACGATGAGCGTCCCAACACTGACACCTCCATTGTCACCTTCCTGCCAGGTGAATCGGAGAAGCCCTGTGTGGTGACTCTGGTGGATGACTCTGTCCACGAAGAGGAGGAAGAGTTTCGTCTGGTGCTGGGGAATCCCAAAAGCGAATCACCATTCGGGGCGTCTCTGGGAGAGCAGAAGGAGACGCTGATCAAAATTACAGATGACAAAGACAAACCGATTATCAAGTTTTCTGAAATCAAATACAGTGTCAAGGAACCACAAGTGCAGGGTGAGATCGCTGTGGTGAAGATCCCAGTGCTGCGCCTCGGGGACACGTCCAAAGTGTCTGTGGTGCGAATTCACACGAAGGACGGTTCTGCAACCTCTGGGGAGGATTACAACCCCCTGTCAGAAGATGTGGAGTTTaaggaaggagagaaggagcACTTTGTGGAGGTGGAAATTCTGTacgatggggagagagagatgagagaggcCTTCACTATCCACATGAAACCTGATGAGTACATGGTGGCTGAGACACAGATGAGCAAGGCCATCATATACATCGAGGAGATGGACAGCGTGGCAGACGTGACTTTCCCCGCGGTGCCTCAGGTCGTCTCCCTGCTCATGTACGATGACACAGCCAGGAGCAAGGACCATCCCAACCCTGCCACTGGCTACCCTGTAGTTTGTGTAACGGCCTGTAACCCCAAGTACTCTGATTTTGACAAGACCGGCTCCATATGCTCAGCGGAGAACATCAACGACACGATGACACAATACCGCTGGCTGGTGAGCGCGCCCAGTGGCCCGGACGGCGTCACCAGCCCCATGAGGGAGGTGGACACGAACACTTTCTTCACCAACACCAAGTCCATCACGCTGGACGCCATATACTTCCAGGCAGGCTCCCGGGTCCAGTGTGCGGCCAGGGCCTTCAATGCCAATGGAGATGCTGGCCTGGAGCTGCTCAGCCCCATCGTCAGCATCAGCGTGGAGGAGGGTCTCTGTCAGCCTCGGGTCCCAGGAACAGTTGGGGCCGAGCCATTCTCTGCCAAAATTCGCTACACCGGCCCAGACGACCCCGACTTCCCTAATCTCATCAAACTGACCATCACTATGCCCCACATGGATGGCATGTTACCAGTCATCTCCACGAGGCCCTTGTCCAACTTTGAGCTGACTCTGAGCCCAGATGGCACCAGGGTGGGAAACCACAAATGCTCCAACCTGCTAGACTTCAACGAGATCCAGACCCAGCATGGCTTCCTCACTGAGGGCACCAAGAACCCAGAGGTGATCGGCGAGACCTCCCCCTACCAGTACAGCACCGCCCTGCGCTCCGCCAACTCCCTGCGCTTCTACCGCAACCTCAACCTGGAGGCCTGCCTGTGGGACTTCAACAGCTACTACGATATGTCGGAGCTGCTGACAGACTGCGGGGGCAAAATCGGCACCGACGGCCAGGTGCTCAACCTGGTGCAATCCTATGTCACGCTGCGGGTGCCGCTCTATGTCTCCTATGTGTTCCACTCCCCCGTGGCAGTCGGGGGCTGGCAGCACTTCGACCTGCAGTCCGAGCTGCGGCTCACCTTCGTCTATGACACTGCGATCTTGTGGAAGGACGGGATTGGCAGTCCTCCGGAGGCCGAGCTGCAAGGAGCTATGTACCCAACCAGTATGAGAATTAATGAAGAGGGCCGTCTAGTGGTGAACTTCAAGACCGAAGCCCGTTTCAGAGGACAGTTCGTGATGTCTCACCCAGGTACCTCTTTAACATCAATGGTGATGTCAGCGGATCACTCTGGGCTCACCTTCACTCTGTCTCTGGTGCGGACAGAGCCGACCTACAACCAGCCAGTTCAGCAGTGGAGCTATGTCTCCGATTTTGCAGTACGAGACTACTCTGGCACATACACCGTGAAGCTCATTCCCTGCAGTGCGTCACCTAACCTGGAGTACAGTATCCCCCCTGTGTGTCACCCCCGGGAGCCCCTCACCTTCGACATGGACATCAGGTTCCAGCAGGTCAGTGACCCGGTGGCTGCCGAGTTCAGTCTCAACACTCAAATGTTCCTGCTCTCCAAGAGGGAGCTGTGGCTGTCCGACGGGTCCATGGGGTTCGGGGAGGGAACTGATGTTGCCTTTGCTGAAGGGTCGCATATCTATGGCCGGGTCATGGTGGACCCTGTGCAGAACCTGGGGGACTCGTTCACGTGCAGCATTGAGAAGGTGTTCCTGTGCACCGGGGCCGATGGGTACGTTCCCAAGTACAACCCCGTCAACAAGGAGTACGGATGCCTGGCCGACGCGCCCTCTCTGCTCTACCGGTTCAAGATTCTGGATAAAGCCCAGCCAGAGACCCAGGCCCGGGTGTTTGGGAATGTGGAGTTTGACGCCAAGCTCGCCATCGACGCGCCAGGTGCCCTGCCCCTGGTGAGACAGCCAGGCTCAGACGGCTTCACCGTGTCCTCAACACCCCTCTTCCAGGTGACTGCAGGCCGGGAGTGGTACATCCACACCATCTACACAGTCCGCTCTAGAACGAACGCCAACCGAGGCATTGGCAAGAGGAGCCTGGAGTATCACCACAGCCTGTCCGCGGCCGCTGTGGCCCCCAGAGGTGAAGTACGCAGCCGGCGGGCGGCGCCCGAGCCAGCGGAGGACATCGGCTCCGAGAACAACCGGGGAACCAACATCCAGCACATCGCCCTGGACCGTGCCAACAAGCTGGTGGTCAGCCAGCGCGAGTCCTGGCCCAGAGAAGAGCTGCTGGAGCGCCCCCTGCTGGAGAGCTCTGGGCAGAAGACCACAGAGCTGGCGCTGCTGCCATTAGTGGCCGGGGCGGCCGGGCTGCTGCTCCTGATCTGCGTCACCACGTGCGTCGTGCTCCTGCTGCGTCGCAAGAGACGCCGCTCCTCGGGTGCCAAGAAACCCCCGCCCTACTCCACCTCCTCCTGCTCGGCCTACCAGGGCAGCCGGAGCAGCAGCGAGACTGTGAGCACGAGGCACAGCACTGACAGCTCTGAGGTT

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125015 lncRNA upstream 255771 18758062 ~ 18844449 (+) True G100082
TU124967 lncRNA upstream 470076 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 470649 18628322 ~ 18629571 (+) False G100046
TU124965 lncRNA upstream 470649 18628322 ~ 18629571 (+) True G100046
TU124914 lncRNA upstream 801916 18297039 ~ 18298304 (+) True G100005
TU125101 lncRNA downstream 11840 19120828 ~ 19125504 (+) True G100143
TU125103 lncRNA downstream 24076 19133064 ~ 19167834 (+) True G100145
TU125219 lncRNA downstream 603899 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 617584 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 617584 19726572 ~ 19775290 (+) False G100241
AMCG00015736 mRNA upstream 36366 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015734 mRNA upstream 248942 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015731 mRNA upstream 272205 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015725 mRNA upstream 328887 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015727 mRNA upstream 383706 18689738 ~ 18716514 (+) True AMCG00015727
AMCG00015741 mRNA downstream 339918 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015742 mRNA downstream 531058 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015744 mRNA downstream 595435 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015746 mRNA downstream 653813 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015745 mRNA downstream 704602 19813590 ~ 19821835 (+) True AMCG00015745
TU125009 other upstream 328254 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 774316 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 1968471 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 2968833 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3298586 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 1158419 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3571222 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 5756101 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 7154927 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 7264165 26373153 ~ 26377699 (+) True G101275

Expression Profile