RNA id: AMCG00015741



Basic Information


Item Value
RNA id AMCG00015741
length 558
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00015741
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19448906 ~ 19512925 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAGTCTGATCCAGCCGAGGTAGTAGTCCTGGAACGATGTCACATTGTGGAGAGCGGAGATAACAGAAATGCTGCATTAAGCATCAAGTTTGAGAGCGGAGACCCAGATCTTTACCTACAAGCCTTCACAGAGTCAGACTGCAAATCCTGGATTGCAGCACTCCGAGAGGCAAACTCGGAAGGTTTGCAGAAAAAAATCCTCCACCTTCAGCAGCTCATCATGGAAATGAAAGAGAGCGAGCCGGCAGACTGCCTAGCAAGGGAAGCAACCCAGGCAGgtcCAATCCTGATTCCAAAGCTGCCACATGTGGAGTTCAGTCTAGCATGCAGGGAGCTTGCTGCCCCGGCCAGAGAAAGGAAGCCCAACGCTGTGGTGCAGGTTGctgtaataaacacacaagaGCAGAGCCTGACAGCTTACTCCAACACTGAAATAGTAGAGGGAACAAGAGACCCACTGTTTCTGACTGGTGTGACCTTCCCTCCAGAATACGCCATTTGTGAGGAAACTCGGGTCAAGCTAACGGTCTATGATGTGAAAGATAAATCACAAGAAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125103 lncRNA upstream 281072 19133064 ~ 19167834 (+) True G100145
TU125101 lncRNA upstream 323402 19120828 ~ 19125504 (+) True G100143
TU125015 lncRNA upstream 604457 18758062 ~ 18844449 (+) True G100082
TU124967 lncRNA upstream 818762 18628322 ~ 18630144 (+) False G100046
TU124964 lncRNA upstream 819335 18628322 ~ 18629571 (+) False G100046
TU125219 lncRNA downstream 199962 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 213647 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 213647 19726572 ~ 19775290 (+) False G100241
TU125231 lncRNA downstream 215731 19728656 ~ 19729528 (+) False G100241
TU125233 lncRNA downstream 215731 19728656 ~ 19782763 (+) False G100241
AMCG00015737 mRNA upstream 339918 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015736 mRNA upstream 385052 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015734 mRNA upstream 597628 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015731 mRNA upstream 620891 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015725 mRNA upstream 677573 18770126 ~ 18771333 (+) False AMCG00015725
AMCG00015742 mRNA downstream 127121 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015744 mRNA downstream 191498 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015746 mRNA downstream 249876 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015745 mRNA downstream 300665 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015748 mRNA downstream 354944 19867869 ~ 19905638 (+) True AMCG00015748
TU125009 other upstream 676940 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1123002 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2317157 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3317519 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3647272 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 754482 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3167285 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 5352164 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6750990 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6860228 26373153 ~ 26377699 (+) True G101275

Expression Profile