RNA id: AMCG00015742



Basic Information


Item Value
RNA id AMCG00015742
length 1218
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00015742
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19640046 ~ 19671896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAAATTCACCTCAATTCTCTTTCTTGCATATTCAGCTTCAGCACAGCGTACCAATGCATCTACTACTCTCCGGAAAACACTGCCAAGGCTAAGGAAGTGCTGACCAACATCGGCCTGCTGCAGCCTCTCATCTCCTCCCTCGCAGATCAGCTGCTGCAGGCTTCCCAGCAGCACTCCTCCGAACTCCTGAAGGAGGCTTTGAAGACGCTCTCAGACAAAACGGAGCAGTTTGTGCACGCACTCAAAGACGAGTTGGTGAAGAATGCCTTGCTTGCGCTCTACACCGCCCGCCCCAGCTATGTCAACAAAAGACACTCCACGGTCTGCAACAACGTGGATGGAAACGAAAGCCCGTCGAAAGAGAACTGCCCGCATCCACTGAAGAGACAGGACTCCATCCCTCACCATTCGGAGTACGACGAGGAGGAATGGGCAAGTCCGGACAGGGTGTGGGTAAATGTTGCCAAGAGCCTGAACTGCATCATTGCCATGGTGGACAGGCTAGAAGAGCATGAGAACAACAACCAAGAGACCGCAACTGACCCTAAGCTAGCAGATGTCATCACTTCACATACTAGTTGGGACTGGCAGGAGCAACTCTACCCTCTTGTGGTCACACTGAAGGACTGCGTGACAGAAGTGGTGGATCGAGCCAAGAAGTCCATGACTTTTGTTCTTCTGCAGGAGGCCGCTTGCAGCATCCATCAAGGCCTGGTGCTGAAGCAGAGGAGAGACGTGGTCTTCAGTCAAGCACTCGCTGCTTTGGCCTGTGGGTTTGTGATGCGACTTTATGCCGGTCTGGAGGACAAAGGGTTTCTACAGCAACTTCATCTCGTTGGGCTGATTGCGCAGTTTGAAAGTCTACTCAGCACATACAGTGAAGAGATCGGAATGCTGGAGGATATGGAAGTTGGCATTTCAGATCTGCAGAgagtaacatttaaaatcacagaAGCCAAGTCTGAGGATCCCAATGATCTGCAGCCAATTGTCAGTGGCAGACGCTTTACAGTCCTCCCACGAGGGACTATTATACTGTTGAAGTGCCATTACCACATCTGCCGCAGGCTGAATGGTGTCAGGTTCACTAGCTGTAAAAGTGCCAAAGACAGAACGTCCATGTCTGTCACACTGGAACAATGTGCTCTGTTGCGAGACGAGCATGAACTTAACAAGGACTATTTCATAAGAGCCCTGGACTGCATGCGGAGGTAG

Function


GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko04713 Circadian entrainment
ko05031 Amphetamine addiction
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125103 lncRNA upstream 472212 19133064 ~ 19167834 (+) True G100145
TU125101 lncRNA upstream 514542 19120828 ~ 19125504 (+) True G100143
TU125015 lncRNA upstream 795597 18758062 ~ 18844449 (+) True G100082
TU124967 lncRNA upstream 1009902 18628322 ~ 18630144 (+) False G100046
TU124965 lncRNA upstream 1010475 18628322 ~ 18629571 (+) True G100046
TU125219 lncRNA downstream 40991 19712887 ~ 19713244 (+) True G100232
TU125234 lncRNA downstream 54676 19726572 ~ 19730564 (+) True G100241
TU125235 lncRNA downstream 54676 19726572 ~ 19775290 (+) False G100241
TU125231 lncRNA downstream 56760 19728656 ~ 19729528 (+) False G100241
TU125233 lncRNA downstream 56760 19728656 ~ 19782763 (+) False G100241
AMCG00015741 mRNA upstream 127121 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015737 mRNA upstream 531058 19100220 ~ 19108988 (+) True AMCG00015737
AMCG00015736 mRNA upstream 576192 19058062 ~ 19063854 (+) True AMCG00015736
AMCG00015734 mRNA upstream 788768 18840646 ~ 18851278 (+) True AMCG00015734
AMCG00015731 mRNA upstream 812031 18806089 ~ 18828015 (+) True AMCG00015731
AMCG00015744 mRNA downstream 32527 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015746 mRNA downstream 90905 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015745 mRNA downstream 141694 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015748 mRNA downstream 195973 19867869 ~ 19905638 (+) True AMCG00015748
AMCG00015747 mRNA downstream 288648 19960544 ~ 19968342 (+) True AMCG00015747
TU125009 other upstream 868080 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1314142 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2508297 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3508659 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 3838412 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 595511 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 3008314 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 5193193 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6592019 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6701257 26373153 ~ 26377699 (+) True G101275

Expression Profile