RNA id: AMCG00015747


Basic Information

Item Value
RNA id AMCG00015747
length 4338
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00015747
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19960544 ~ 19968342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGACAGATACAGTCAGCCACAAAATTAACATGATATACTTTTCTTCTTATAGACATGTACATTTAGGTGTTTCGAAATAATGTTCTTTTAAATCCAAGAATGAACCAGTGGAGACCAGCTGTTTATGACAGAAGGGGTTATGAAACGATCCTGTTATCAGTGTCCCATTGAACCGCAGTATCATAACCATGAACTCCACTcaacttaaaatgaaacattatctGAAGCAAGCCATTAGATAAGTTTGGAAAAGAAATTGTATAGGTACTCCATGTTAATAGCAAGAGATTTGTGTCGACTACAAGATCACTGAAACTTGgaatatacacatttgtaataataatattatagaCACTATACTAGCTGGATGCAAAGGTTAAATAAAGTAGAATAGACAGCCATTCATTTTTCACCAGTTGTCTGCAAAATTATAATCACAACTCTTTTTTCTAttgacataaaacataaatgataATGGaaccagaaaacaaatgcaagaacAACTAACAACACGAACAACCATAACAGCTCTTAGAGAAATTAAGAAGTTGCTGATTGTAATGATTGATTGtggaaaaatgaaatgcattttaaataactcATTCATGATGTATGGAAGGACTAGTCAGTTGTAGTTCATGTAGCCAGGCCAATATAAGgctaaaaaaaaagctttctcGCTCTATCTCCTctacaaataaatcacattacatGTCCATTGTACTAAAAGTAGAGGTATGTAGGAATCTCAATCATGGCTTTGAGAATACTTTAATTTACAATACTTGTCTGGAGAGAATACCatgtgttataaatatatacaatgatACAATATAGCTTGGTGCACCTTTGGATGATGAGTCCATGAGATTGTcatatcattattaattaaattaataaacatacagGATGCATGagatttctgttttccttttcaaaccAAGGAATCATTTAGAGTGCTTAtgatcttatttttaaaaagcttaacATGTCCCTTAAAGTCTGAACCCATGTCATTTGCTTGCTTAGTTATTTCTTAAATTTCTAGGTAGATAAGCAACTGTTGTAATAGCAGAATCGACTCACCAGATTCCTGCAACTTTGGTCACGTTCTTGTAGCGCATATTTCCGCATTTCTGCACACATCTGCACTTTTCGTGTAATGTAATTGGTTCAaaagtgcagatctgcgcagaactgcggaaatgtGCACTGCAAGAACGCGATTTTTTTACCCTGTTAGTAACCATTTAATGCTTTTCCTGTTGGCCAAAGGTGACCGTTCACACACCCTCTCAACCATTGGCTGTGCGGTGGCGAGCCCCTGCAACCTGCTACTGTGATTAGAAATAATGTAAGGACTAGTAGAGGTTCAATTTGATGACTGGACCCATAATTAATATACAcaataatcatacattttaaaaaactgaaaggatattcaattattgtaatttgtatcATAACAATGCATGAAATTAATGTAAAGACGATATTAGGGGTATGATTGTTTCAAGTTATGAAAGAACAAAATTACGttcaagaaaattaaaataaataattttccaaTAATGCACTTACGCCAGCTTGGATATCGTGcccaaatacaaaatgacatAGTTTGCCCTTTAACTGATGGTACAGAAACAACCCAGTAatcaaccaaataaatacataaatgcacagATCCACATAATTGCACCGATCCTATATCCGAAGCTGCATAAATGCGTGGCAGTCATTGTGCAGAGACAGGGTTAAGGTCTGCAGCAGACAAACAATGACAGTGGACTTTGTCAAACAACTCGGCGATCATGGACCAAGACACGCCTCTCTGACCAGGCTTCAGAAAAGtcattataaaaagaaaatcacaaattCATTCCCCTTTCACTTCTTAGTTTAAGAGGACAATTAAAGTGcctcacatttatttaaatacattgctcTAAGGTATCCCGAAAAGGATCTGAAGTAATCATCCACTGGATTTCACAAACTCCAAAGATGGTCGGACTGAAGCCTTCAgataccccccccacccagggAGTGAAGTTCCTCAGTGCTGGAACCGCTGCCTGTATCGCAGACCTGTTCACCTTCCCCCTGGACACGGCCAAAGTTAGATTACAGATTCAAGGGGAGAAAGTGGCTGCCGAAGCTGCAAGGAACATCAGATACAAAGGAGTGTTCGGGACCATCACCACCATGGTTAAAACAGAAGGACCAAAAAGTCTCTATAATGGGCTAGTGGCTGGACTTCAGAGGCAGATGAGCTTTGCTTCTATCCGCATCGGACTTTATGACACAGTCAAACAGTTGTACACAGGTGGAAAAGACAacGCTGGTATTGGCATTCGGATCCTGGCAGGCTGCACCACAGGGGCCATGGCAGTGTCTATAGCTCAGCCCACGGACGTGGTCAAAGTCAGGTTTCAAGCTCAGTTGAACCTCAAAGGTGTGGAGAGGCGATACAAAGGCACCCTTCAGGCATACAGGCAAATCTTCAATCAGGAAGGGCTGAGAGGACTGTGGAAAGGCACACTGCCTAATATCACCAGGAATGCCCTTGTCAACTGCACAGAACTTGTGACTTATGACATCATTAAGGAGGCCATTTTGAACCACAAACTGCTGACTGATAATCTGCCATGTCACTTCGTGTCAGCTTTCGGGGCTGGGTTCTGCACTACAGTAATAGCCTCCCCAGTGGATGTTGTTAAGACTAGGTATATGAACTCACCCCCAGGACAATACACAAGTGCGCTAAACTGTGCTTGGACCATGCTCACCAAAGAGGGGCCAACAGCATTTTATAAAGGatttgTTCCCTCATTCTTAAGGCTGGGTTCCTGGAATGTAGTGATGTTTGTCTCTTATGAACAGCTGAAAAGGGCAATGATGATGTCCAAGCAATCTATAGAAATTGCTACGTAACTGATCTGCCCCGCTAGAGACAATAACCCCCATGAGTTTTTCCTAGtatgaaaaaaatgcatctaATGGACCAATCACCCTGTGCAATTTTGAGCCTCAAAAAGACCACTCGGAAGAATAGCCCTGGATGTAACGGCGAAGAAGGAATGCATTATTACAACGGGGAGAATGACATGTCTGAGGGTCTTTCAGAGCCTgaagttgtttatttaattaccaAAGGTAATTACTCCTTTGTAAAAAGGGAAAGATGGTTGTGCATGTTAATGTATGCATTGACTGAAAGTAATTAGCCACAAGTGGCTGAGCACAACTGTATCCTCACAGAATTGTGAAAGAGAAAGACGTCCCTGGGAGACAGCAAGAAGGTCCCTTTTCCTCCTGATTCTACAAAGTGGATTCTCAATAAGTTTTAGTTTCTGAATTATTGCAGCCATGCTGGAGCCCTGTTTTCTAGTTTGAGAGTGAAGTTATGTGTATCAGAATTAGGTTCATATATGGAGACTTACTTTATTCTGATTAGGTCTTAAAACCTAAAAGTGAATACTAACCTAGCTGACCAAGAAGCAGTGAGGATTGGAAATGAAACTGGGGCACCGAGCTCCCAAGTCCACAGCAGACTGAATAAATCAGGTTTAGCTTGCTACAACATACATGCTTGTTAATGGAacagtcatatatatattttttaaccaaagtaccaattcacatatttatattgaCAATTaaccataataaaatacatatttttaatacaacacTTTATTTGCGTTCTTAATACATTCATGCGAGTATTACACTATTTAGATATTCTATGGTAAATTGGTTGCcttgatgttttaatttggaaattattCAATGATTCAGCTGGAAAAAGACAAGGTGGTTAGTCCTCTAGAGAAAACAGAAGCCCGGAGGATCACCTAGATTATACATTCAGATTACTTTTCTATTTGATACAAACATTGCATGCATTTCTGAATAATGCACCAGGTCAGAGTccaaatagacacagacaccTTTGTTGCTTTTCCCCCTAAGAcatattttaaggaaaaaagtttGTTATACACTTACAGGGCTGGATTATGccttaacatatatatattcaatacaaaacaactaaattgtGACTTCAAAGGTGTGGAGAGGCGATACAAAGGCCTCTTTTTTATCATGTCCTTGGGTTTACATAAGCAACTTATCAGTaaatatactttgttttaattttacaacaaatgcaaaatgcataaaataattacaatttaattctaCTATAAATattgtccatccatccatccattttcaaaaaacacttatcctggtgagagTGGCAGGGAAGCCAGAACCAAtccccggcaggcatagggcgcaagacAGGAATACACCCAGAGTGGG

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15103 UCP2_3, SLC25A8_9; solute carrier family 25 (mitochondrial uncoupling protein), member 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125233 lncRNA upstream 177781 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 185254 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 229980 19726572 ~ 19730564 (+) True G100241
TU125231 lncRNA upstream 231016 19728656 ~ 19729528 (+) False G100241
TU125219 lncRNA upstream 247300 19712887 ~ 19713244 (+) True G100232
TU125368 lncRNA downstream 356268 20324610 ~ 20327167 (+) True G100349
TU125492 lncRNA downstream 811004 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 859986 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 1095708 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 1338264 21306606 ~ 21310605 (+) True G100507
AMCG00015748 mRNA upstream 54906 19867869 ~ 19905638 (+) True AMCG00015748
AMCG00015745 mRNA upstream 138709 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015746 mRNA upstream 169242 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015744 mRNA upstream 255450 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015742 mRNA upstream 288648 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015756 mRNA downstream 67006 20035348 ~ 20038407 (+) True AMCG00015756
AMCG00015754 mRNA downstream 142363 20110705 ~ 20111939 (+) True AMCG00015754
AMCG00015757 mRNA downstream 168346 20136688 ~ 20145630 (+) True AMCG00015757
AMCG00015758 mRNA downstream 215847 20184189 ~ 20225089 (+) True AMCG00015758
AMCG00015759 mRNA downstream 306601 20274943 ~ 20299858 (+) True AMCG00015759
TU125009 other upstream 1188578 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1634640 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2828795 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3829157 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 4158910 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 299065 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 2711868 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4896747 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6295573 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6404811 26373153 ~ 26377699 (+) True G101275

Expression Profile