RNA id: AMCG00015748


Basic Information

Item Value
RNA id AMCG00015748
length 4810
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00015748
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19867869 ~ 19905638 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGGTTAATCCGGAGGAGGTGTTGTTGGCCGGCGCCCTGTGGATCACCGAGAGGGCAAATCCCTACTTCATCCTGCAGAAGAGGAAGGGCCACGGAGACGGGGGAGGCGGAGGGCTGGCGGgTTTGCTGGTTGGAACTCTAGACGTTGTCCTGGATTCTAGTGCTCGTGTGGCTCCCTACAGAATCCTATACCAGACACCGGACTCCATAGTCTACTGGACAATAGCCCATGGTGGCTCCCGAAAAGAGATTACTGAGCACTGGGAATGGCTGGAGCAGAACCTCCTGCAGACACTGTCCATCTTTGAGAATGAGAATGACATCACCACGTTTGTTAAAGGCAAAATCCAGGGCATCATAGCGGAGTACAATAAGAACCATGACATAAAGGAGGATGACGACACGGACAAGTTTAAGGAGGCCACGGCCAAGTTTCGGAAGCTGTTTGGAATGCCCGAGGAAGAGAAGCTAGTAAACTATTATTCGTGTAGCTACTGGAAAGCCAAGGTCCCACGCCAGGGATGGGCCTACCTCAGCATCAACCACCTCTGCTTCTACTCCTTCCTACTGGGCAAAGAAGCTAAACTGGTGATCCGATGGGCAGATATCACACAGCTGGAGAAGAACCCCACCCTGCTGTTGCCCGACATCATTAAAGTGAGCACCAGGACCAATGAACACATCTTCTCTGTCTTCCTTAACATCAACGAGACCTTCAAGCTGATGGAGCAGCTGGCCAACATCGCCATGAGGCAGCTCCTGGACAACAAGGGCTTTGAACAAGATCGGTCTCTGCCCAAGCTGAAGAAAAAATCACCCAAGAAAGTATCTGCCCTTAAAAGGGACCTTGATGCAAGAGCCAAGAGCGAGCGCTACAGGGCCCTGTTCAGGCTACCTAAAGATGAGAAACTGGATGGACATACAGACTGCACTCTGTGGACTCCCTTCAACAAGATGCACATTGTGGGCCAGATGTTTGTTTCCACTAATTACATCTGCTTCACAAGTAAAGAGGAAACGCTCTGTAGCCTCATCATCCCCCTCAGAGAGGTGACAATTGTGGAGAAGGCAGACAGCTCCAGTGTGTTGCCCAGTCCACTGTCCATCAGCACCAAGAACAGAATGACGTTCCTCTTCGCCAACCTCAAAGACAGAGACTTCCTGGTCCAGAGGATTTCTGACTTCCTGCAGCAAACCACGTCCAAGATCTActttgagagagagataacaGGAAGCTACAACAGCTCCGACGAAGAGGTAGACACCCTGCAGAGCAGCCTCCTGTCCTGTAGTCCTCAGAGGAGCCTGGGCTCGGAGAACGAGGGCGAGCGCCAGTTCAACCTGAATGACAACAGCATCCCCACTGCGACCCAACCCCTGATGACCATGTACCGGCGCAGATCCCCGGAAGAGTTCAACCCCAAACTGGCCAAAGAGTTTCTGAAGGAGCAGGCCTGGAAGAATCATTTTACGGAGTATGGCCAGGGAGTTTGCATGTATCGCACTGAGAAGACCAAGGACCTGGTCTTGAAAGGCATCCCTGAGAACATGAGAGGCGAGCTGTGGCTGCTCTTCTCTGGAGCCATCAACGAGATGGCCACTCACCCTGGCTATTACGAAGATCTCGTGGAGAAGTCCATGGGGAAGTACAACTTGGCCACCGAGGAGATCGAGAGGGACCTTCACCGCTCCCTGCCAGAGCACCCTGCCTTCCAGAATGAGATGGGCATCGCTGCCTTGAGACGAGTGCTGACAGCCTACGCTTTCAGGAATCCCAACATCGGATACTGCCAGGCCATGAATATTGTCACCTCCGTGCTTTTGCTCTATGCCAAGGAAGAGGAGGCGTTCTGGCTGCTGGTGGCCCTTTGTGAGAGAATGCTGCCAGACTACTACAACACAAGGGTTGTCGGTGCGCTGGTGGACCAGGGGGTGTTTGAGGAGCTAGCCCGGGAGTACGTGCCTCAGCTCTATGACTGTATGCAGGACCTGGGGGTCATCTCCACCATTTCGCTGTCCTGGTTCCTCACGCTGTTCCTCAGTGTGATGCCCTTCGAGAGTGCGGTCGTCGTGGTGGACTGCTTCTTCTACGAGGGCATCAAGGTCATCTTCCAGCTGGCCCTGGCTGTGCTCGATTCCAACATTGACAAACTGCTGAACTGTAAGGATGACGGAGAGGCGATGACTGTCTTGGGCAGGTACCTGGACAGTGTCACTAACAAGGACAGCACCCTTCCCCCAATCCATCACCTACACTCTCTTCTCACTGACGATGGGGACCCTCACCCAGAAGTTGACATCTTTAAACTGGTCCGGAGCTCCTATGAGAAATTTGGGACCATCAGGGCTGACGTGATTGAACAGATGCGGTTCAAGCAGAGACTGCGAGTGATCCAGACAATTGAAGACACTACAAAACGCAACGTGGTCCGTACTATTGTGACTGAAACTGAATTCACCATTGATGAGCTTGAAgagctgtatgttttgtttaagGCCGAACATCTGACAAGCTGCTACTGGGGTGGAAACAGCAACCCCACTGACCGACATGACCCCAGCCTGCCCTACCTGGAGCAATACCGCATTGACTTTGAACAGTTCAAGGGCCTCTTTGGGCTGCTCTTTTCATGGGCTTGCGGGGCCCATTCTGACTCGCTGGCCATGCGTTTCTTCAGACTCCTGGACCAGAACGGCGACTCCTTCATCAACTTCAGAGAATTCGTGACTGGCTTGAGTGTGCTTTGTCATGGGGATCTGACCGAAAAACTGAAGCTGctttataaaatgcatgtgCTGCCCGAGCCAACACATGAACAAGAGGAACCAGACTCTGCTTTTGAAGCTACCCAGTATTTCTTTGAAGACATCACTCCTGAGACTTCCAATGATTCCAAGTCCAAGAACGATAAAGACGATGGTTTTGTAACGGTtactttcaaaactgaaaaagTCAAGAAGATGCACACTCCAGACTACCGCACTTACCTACGGCTGTGGAACAAGGAGACCAAGTCCAAGTTGGAGAACATGAAAGAGCTGCCCAAACTAAACCAGGGGCAGTTTATCGAGCTGTGCAAGACTCTGTACAACATGTTCAGCGAGGATCCCGACGAGCAGCAGCTGTATCACGCCACGGCCACTGTCACCAGCCTGCTGCTGGAGATTGGAGAGGTGGGCAAGCTCTTCTGTAGCCCCATGGGCAAGGAGGACGATGGGAACCTCACAGACGGTAGCAGCTCGGGCCAGGCCAGAGAAGATGCCCTTTTCCACCAGAGGGGGCAGGGGGATGCTTTCCTTCCTGGCATAAATGGGAGGGAGGGTGGCAGCGGCGGGAGAGAAAGTGGGGAGGGGGCCGATGTGAAGTTCTGCAGCTCGAGTGCCGGTGGGGAGCAGCCTCTGTGCCCCCAGCTGGAAGACATCAAACTGGAGGACTCGTCCCCCAAGGACAACGGCATGTCTTCGGCCATGCTGATCTCCGATGACGAGACCAAGGACGACACATCCATGTCATCCTACTCCGTGCTGAGTGCCGGCTCCCATGACATGGAGGACAAGCTGCTGCAATGCGAGGAGATTGCGGACGACACGGTGCTGGTGCGCAGCAACCCCGGCGGCTCCCTGCCACACAGCACCAGCATCGACAAGGACTGGGCCATCACTTTCGAGCAGTTCCTGGCCTCCGTTTTGACCGAACAGCCCCTGGTCACTTACTTTGAGAAACCTGTGGAGGTGATGTCTCGGATCACCAACGCCAAGAACGTGCGAAAAGTGGGGCGGCCCATCCTGTCTGCCAGTGACTATGAGATCTCCACTTTCTCTGGGTAAAACTGAGCTCTGTCTGGGTGGGAAGGGGGCAAcagaaataacaaacaaaaaaactgtctttgtcttcttttcttcttctgtccCACTTGTAGACCTATATGAATCCAATACCCATAAGAATCTAAAGCAAGGAATTATGGGTGCAAGTGTACCATGTGATGTTGAATCTGCTGTCAGGTAAAATCAGGAGGCGGTAGGAGGAACTGATCATAAGGCTTTGTGAATACAACACATCAAGTCTGACACTGTATTTTAGGAAGCTGGGAacatttgagaaaaaataaagctgttttattCTTGGACTGTTAAGTTATTTTAATCTGGGTCTAGTGACCTGATTTCCCTAGCAGGCAGGGAGAGAGTAGCAAAACAGATGGTATAGACTTTCAAAGAGAAGGAAGTGCAATCATTTTAAACTAtctaaaatatacaaacaacGCTTGCTATACTTTATATGAAGTCATGTACAATACTAATAACCTCTTAGATCATGTAAGGCTGTGTATTCTTATGTTATGATCTACACTTACTCTCAATAGAAGGAAATTAAACTAACGTCATGTTTAAAGCTGTAtctaatctgaaaatgtacttCTGTGGCTTAACTACGTACTGTTCGGAATACTATGCCACTTTGTATAGACTGTCTTAGCTGTCTATGAAAATATTCTACTGTATCGAAACTGGAGCACctgcactttcttttttttttttgtcacaaaaTGTTTACGTTCCTGTCTTTTATTATTCCCATAGAGGATGGTTTATTTGCTTGATAGTACCGTATCATACCTGACCTTTGAAAAGctgaccttttttttgtttttatttatcgcTGTATTTGaagctgctgttttaatttgttccaatgtgaaatgttattatatgattatttctttttaatatgttaTGTATATGGTTTCAACCACAATGAAGAATGAAAGAATGTAGAATAAAAACTTTGTGcgacatgaaaaca

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125233 lncRNA upstream 85106 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 92579 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 137305 19726572 ~ 19730564 (+) True G100241
TU125231 lncRNA upstream 138341 19728656 ~ 19729528 (+) False G100241
TU125219 lncRNA upstream 154625 19712887 ~ 19713244 (+) True G100232
TU125368 lncRNA downstream 418972 20324610 ~ 20327167 (+) True G100349
TU125492 lncRNA downstream 873708 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 922690 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 1158412 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 1400968 21306606 ~ 21310605 (+) True G100507
AMCG00015745 mRNA upstream 46034 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015746 mRNA upstream 76567 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015744 mRNA upstream 162775 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015742 mRNA upstream 195973 19640046 ~ 19671896 (+) True AMCG00015742
AMCG00015741 mRNA upstream 354944 19448906 ~ 19512925 (+) True AMCG00015741
AMCG00015747 mRNA downstream 54906 19960544 ~ 19968342 (+) True AMCG00015747
AMCG00015756 mRNA downstream 129710 20035348 ~ 20038407 (+) True AMCG00015756
AMCG00015754 mRNA downstream 205067 20110705 ~ 20111939 (+) True AMCG00015754
AMCG00015757 mRNA downstream 231050 20136688 ~ 20145630 (+) True AMCG00015757
AMCG00015758 mRNA downstream 278551 20184189 ~ 20225089 (+) True AMCG00015758
TU125009 other upstream 1095903 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1541965 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2736120 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3736482 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 4066235 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 361769 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 2774572 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4959451 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6358277 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6467515 26373153 ~ 26377699 (+) True G101275

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001159 True 4072 mRNA 0.52 21 NC_007112.7 53321878 ~ 53361108 (+)
grasscarp (Ctenopharyngodon idella) CI01000302_00657378_00679052.mRNA True 3642 mRNA 0.53 22 CI01000302 657378 ~ 679179 (+)