RNA id: AMCG00015756



Basic Information


Item Value
RNA id AMCG00015756
length 1038
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00015756
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20035348 ~ 20038407 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGTGAGCCCTTTAACTGTTGTAGATAACTTGGGAAGCAAGGAGCCCAATGACAACTGGGAACATGAACCCAAGTTGAACCGAAACAAAGTTTGCGTATCTCCAGCTAAACCCAAGCAGGACAAAACACTGGACTATGGAAAGCCCAGCAAAGCAAATATTTCTAACCCGGCTGCTTCTCCAAATGGAGATCACAATCTCCAATCCAAATCTGAAGTCATAATTGGGAAAGACATGGAATCCAGTGGAGATTTGAAAAGCATGTGCGCAAGTGACATGAAAGAAGGGCAGAGGGACAATAATGCCAATTTGAGAGTGTTACCTACAGTTCAGAAGGAGGATAATTCTAATATTAGCCAGTCAACGTCAGTCATCCAATCAAAGGCTGGTTTGCagacagaggagagggaagTGAAGGTGCAGAGTTCAGAAAAGGCATTTCAAGAACagaacacacaagcacagaacTCAGATCCAATGGGGATATCAAGGCAAGACGTTTCTCTAAAGGATACATCTTCCGAAGCTCTTCTGCCAAAAAAAGAGGCCGTCCAGTCCAAGTGCCCTGCTGCTGAATCCTCCTCACACACACCTCTGCCTTCTGGGAAAGTCACCGAAGCACCTAAATCAACAAAAGATGATCCCAAAGCTGTCCTCGCCCAGGCCAAAGCCGCTGTGGATAGCAACAGCAAATCTGCAAAGAACGAAGAAAACGTAAAACAGAAAGCTGTCCTATCAGAAGACAAATCCAAAGTCAAGGACCAGAAAGAGAGGAAGGCAGCAGGGGATTCAGGGAAGCACAAAAAGGACTTGGAGTCAAAGACCAACCAGAAGAGTTCGGGTGGGAAAACGTGCAAGCAGGAAAAGGCATCAAAGAGCATACGCGATGTCGTGTGGGATGAACAAGGGATGACATGGGAAGTTTACGGAGCTTCTCTGGATCCTGAATCCCTGGGCTTTGCCATCCAGAGTCACCTCCAGTGCAAGATCAGAGAGCATGAGAAGACAGAGAGGATCGGCAAGCAATTTGTTGTGTGA

Function


GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125233 lncRNA upstream 252585 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 260058 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 304784 19726572 ~ 19730564 (+) True G100241
TU125231 lncRNA upstream 305820 19728656 ~ 19729528 (+) False G100241
TU125219 lncRNA upstream 322104 19712887 ~ 19713244 (+) True G100232
TU125368 lncRNA downstream 286203 20324610 ~ 20327167 (+) True G100349
TU125492 lncRNA downstream 740939 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 789921 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 1025643 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 1268199 21306606 ~ 21310605 (+) True G100507
AMCG00015747 mRNA upstream 67006 19960544 ~ 19968342 (+) True AMCG00015747
AMCG00015748 mRNA upstream 129710 19867869 ~ 19905638 (+) True AMCG00015748
AMCG00015745 mRNA upstream 213513 19813590 ~ 19821835 (+) True AMCG00015745
AMCG00015746 mRNA upstream 244046 19762801 ~ 19791302 (+) True AMCG00015746
AMCG00015744 mRNA upstream 330254 19704423 ~ 19705094 (+) True AMCG00015744
AMCG00015754 mRNA downstream 72298 20110705 ~ 20111939 (+) True AMCG00015754
AMCG00015757 mRNA downstream 98281 20136688 ~ 20145630 (+) True AMCG00015757
AMCG00015758 mRNA downstream 145782 20184189 ~ 20225089 (+) True AMCG00015758
AMCG00015759 mRNA downstream 236536 20274943 ~ 20299858 (+) True AMCG00015759
AMCG00015765 mRNA downstream 446480 20484887 ~ 20501432 (+) True AMCG00015765
TU125009 other upstream 1263382 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1709444 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 2903599 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 3903961 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 4233714 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 229000 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 2641803 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4826682 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6225508 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6334746 26373153 ~ 26377699 (+) True G101275

Expression Profile