RNA id: AMCG00015758


Basic Information

Item Value
RNA id AMCG00015758
length 4945
RNA type mRNA
GC content 0.43
exon number 18
gene id AMCG00015758
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20184189 ~ 20225089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agCTCACAGGAAGATGAAAGACCAATATCTCCATTTTACATGAGTGCCCAAATCTCCACTGTCAACGGCAAACCCAGCTCTGAAGACCTTCTGGAAAGGACTATCAGGTCAGCAGTAGAGCAGCACCTCTTTGATGTGCATGGTGGCGGGGGTCAAAGTTCAGAGGATTCTGAATCGGGGACGTCTTCCCCCACTCCAGCACTGACAGCCAGGCAGAGACGCCGACAGCAGAAGGATCAGGATGAAGTGCGGAAACACAAAGACATGGAAGACATCAACAAGGAGAACATCCCCTCTCTATTTACCAGCAATGAGGATGGGACGCAGGCCGCtcaggagggagagaagaagcAGATAGACTGTAGCCCTACTTACATCGAGGAGAGCATGAGACAGAAGAAACCCAAGTCCAAGCttccaaaacacaaagaaaaccagGTTGGGCCTGTTGTAATGGATTGTTTTAATGCTTCAAGATTACAAGACCGAGGGCAAACAGATAACCTGGAATCCCTTGCAGATGAAGGaAAACATATTCAAATTGAGGCTGGTTCGGGACAGTTTGCTCAGACTTCAGCTATGAAGATCCAGGAGGTGCAGAGTGGCTGCGAGACAGCGAGAGCACAAAGAAACCAAGAAGCAGATGTGTGTGAGGAAAGCTCAGTGCCCGAGGTTCCCAGACTGGATTTGTCAGCCCTGACGGAGGACAGCAACTGGGGAGaTTCGTCTTTTTTTACTGTCCCTGTCATTGATTTCAAAAGCTATTGGCAGCAGAGTTACTATGAGGAACCTGTCCCAGCCTATTCATCCTGGCAGAGGGAGAGCATGGACGGTGACGAAGCCCACCTGTCCCCGCAGGCAGGAGGCCGTCTGATTCGCCAACTGCTAGAAGAGGACAGCGACCCTATGCTGTCCCCTCGCTTCTACGCCTTCGGACAAAGCCAGCAGTATCTGGACGACACAGAGGTCCCGCCCTCGCCACCCAACGCACACTCCTTCATGAGGAGGAGGCGGAGCTCGTCGTTGGGCTCCTGTGAGGACGACAAGGAGGAGCTCTCATCCGCCCATCTCTCCAAGAAGATCCACAGCCTGAAGAAGAAGATCCGCAAGTATGAGGAGAAGTTCGAGGAAGAGAGGAAGTACAGGCCCTCTCACAGTGACAAAACCGCCAATCCGGAGGTGCTCAGGTGGATGAATGAACTCGCCAAATTGCGTAAAGAACTGAAAGAGATGAAGCTAAAGATGTCGGAGGAGGACCTGCCCCCCCTAACCCGCCAACGCAGCAACACCCTGCCCAAGAGCTTTGGCTCACAGCTGGAGAAAGAGCCGGCAGTGGAGAAAGCGCCGAAGCCCCCTGTGGAGAGCACCCTGGAGACCGTCCTGAAGAAACTGCAGGAGAAGAGGGCAGAGGTCAGCCGCCCAGAGGACATCAAGGACATGACCAGGGAGCAGATCGGTGCCGAGAAGGTGGCGCTCCAGAAGGCCCTGCTGTACTACGAGAGCATCCACGGGAGACCAATAACCAAGAGCGAGAGACAGGTGATGAAGCCCCTGTATGATAAATACCGCCTGGTCAAACAGATTCTTTGCAGAGCGACCTCGATTCCCATCATCGGCTCCCCCTCCAGCAAGCGCAGAGGTCCTTTGCTGCAGCCAATTATCGAGGGCGAACCAGCATTATTCTTCGAGGACATCAAGgaggaggaggatggctCCGAGGACGAGAGCAACACGAAGGCTGACTTAACAGTCACCGTGAAGACCGAGTTCAACATGCGCAGCTTCCTGGACCAGCTGGACGAAGAGGTGGACGGATTCATCTCTCCCGTCGACGAGATCTCCCCGTCCAAACACAACATAGATATGAGGCTGTCCAACCTTCATTCGGCCACAATGCCTGAACTAGTGGAGCAGCTTCAGGAAGCCAGGGAAGATAAGAAGAGAATCCGCAAGAAACTGAGGGAATTTGAAGATAAATTTTTCAGACAAAATGGAAGAAATGTGCAGAAGGAGGATCGCACCCCCATGGCAGAGGAGTACAACGAATACAAGCATGTCAAAGCAAAGTTAAGGCTTCTTGAAGTGCTGATCAGCAAAAGAGACTCTTAAAGATCTTCCATGGAATACCGCACGACTAACTAGTGGACTGAACTAGTGAAGAAAAGTGGTAGCATTTGTCTAAACCCTGGATGGAGTTGTAAAAAGAGAGATGCAAAGCCcttgttatttctttatttaaaacaattgcatAAAGTGCCATACAAAAGAGCCACCGACTGAAAGACACTGGTGGTGTGGATGATTTGATCCAAGTGGCTTTCTCTCTGCACTTCTGAAGAAGCCCACAGACAACTAACACTACATAGGAGTTTATAtcagaaattaatatataagCAATGACACGCAAGTGATGTCAACTCCAGATCTAGTGAGTGGGGAACACGCTGGGTTCAGCCATCTCAAGCCCACACCATTCTGGGCAAAGAGACACTTTAGTGGGATGCCCCGTGAAGGGGCCCATGTCTGACAATAAGCTACAAAGGAAATGGATTTGGGGAAAAAGAACAACGAAGCTCATTgagaatgtttttaatgatcGTGGTGTGGGTTCTTTTCAGAGAGCTCTCCTGGGGCAAAATCACAAATTCTTAATTCCTGCACTAATTGGTGAACGAGTTCTTATGagcatatatttttgttgtgattagtgtatatgtgtacatatgCACACGTGTAATTCACAAATAGCTCATACGTTTTACTTACaatcttgaaatacattttggtaCTAGACCAaaagtttgttaatttaatgactttgattgttaaatatatttttatatcaatttttttttaaatctaatcttcatacttgtttttttcaagTAATGATTTCACTTTCAATTTTCAGTTTCCCAGTACAGTTCTCTGGAGATGGAACTGCAAAGATTTTTAAAGTTGCTCCTTTTGAGAAGTCATTTGAAAGGAAGTTTctaatgaatatttttttctaataggTTTCAGATAGAAGCTGAATAGGCTGGATAGTGAGACCTGTTGGGTTTGTTCTTTATAAGAAGGGGGAGTCCAGAGTActcacaaataattaaatgcctAGATCTTCACTGTGAGAAGAGTccctttaaatacaaattgcagGTCAAATGAATTCTCCTATATAGTTTAGGTACTGGTAATAGTGTTCAAATGAAGAGGCAGTTTCTTTAAAGATGTGCAGATTGTTGGGAGTTGTGTTGTGATGTGATCACTGCTTTTGAAAGATGGAAATCTGTGGGACTTACTGCATTGTTCAAAATCTCGAGATTCtttgctaaaaaacaaaatctttccAGGCACTTCATCTAAAAAAGTTTGATGGAATTCATTAATTAACCTCAACTCTGAATATTGTTGTTTGGTTCAACGGCAGATATGAAGCAATTTAGTTTAAAGGGACTCCTCTCAAAAGGATGACTTTTGTAGAAAATATATTCTTGGTGAAGATTATTTTTAGGAATCTTACAGTGTAGTGTAAATACACCCCCACTCAGTCTGCATGTTAACACCAAATACAAGTGTTGACAATCCTGCAACAGGCCAGACCCTCTGGACCTTTTCTACTAGAGCTGTGCATTCAATCGAGCAGTGTGTTCACATCGTCCCAATTGTGTTGGTTATGAATTGAAAAGTCGATGTTACAACTAAGATTAGTTTTTTAATTCACCAGTATGATTGATTCGTAAATTCACGGTTTCCTACTACTGTGTGCTTAGTGCCATAATTCACTGGAGTGAAATTGTCCTTACTTTTTCTTGCAAACATTGAATGATCCccaaaaaaatgcatacatattttttgtatttgggtAATTGTCtgggaaatatatattgtttgtaaataagaaaaactaaaaacaggaaaatcactacaaaaaaaaaacttatgcAGAAAAGATGAGTGagggagtttgtttttaaaacataccTTACTAgagttttatgtatttctatgaTCCAAAGAGAACTGAATAGTTTTATGATCACATACCAAAACAGGGGGAACACACTTCTACATGTTGATCACAAGTATTATGCAATTGAACACAAATCATTTCTGACAGGCTGTGCTCTGGATATGCATCTGTTTTCTTCATGGCAACTATGTCACTATGAACATTGCTGCAGTTCAGCTTCTCAGTCAATTGAATTTGTATCCATGGAAATCTAGACTCAGAGCACACAAATGCAGTGCGTGACACAATTCCATTCACTTCATGTAAGTTACAGCTCGAAATCGCCATTGATTGTTGCATCttacttttatattgtttttttgccctgtaattttgtttttcaagtgttGCTTTATGAAGGATGTTTCCAATTGACTGCCTTCCAGCCAAAAGGAAGTCTCTCTAGAGGTGCACTGGCTCCTTGGCATTCGTTAGCTGGGAACCTCATTGTGCAGATGATCTTATAAATGCTTTTCACAGATTACTGTGTAACTGCAGCAGACACTGATCAATTGTAATATATCATGTTTCCCTGTGCCTGTTTCTTTATCTTCAGACCTTTGCATGCCGTTGTAATCCATCATTTTTGTACTTCACCACAAAGACTTAACATCTGACTTTAAACTGGAGAAAATCCTTATCAAAATGCCATCCAAAATGCCTACTGTAAGCACTCGACAGGTACACTGCTTTCTTTTCTAAGTGGTATCAATAGCTTATTTGTTCTGTGTGAATATGGACCCAGATCTACGTTTACATTTCTAAGTAAGCAAGTAAGacgtttaatgttttatttttccctctcAAAGTAAATTAGTGTGACTTCGGTTTTTTGAATGTAAAcactaatggaaaaaaaaaatgggtgtGTACATTTTAgtacataattgtatttgtattttgtatataatatatatatatatatataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125233 lncRNA upstream 401426 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 408899 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 453625 19726572 ~ 19730564 (+) True G100241
TU125231 lncRNA upstream 454661 19728656 ~ 19729528 (+) False G100241
TU125219 lncRNA upstream 470945 19712887 ~ 19713244 (+) True G100232
TU125368 lncRNA downstream 99521 20324610 ~ 20327167 (+) True G100349
TU125492 lncRNA downstream 554257 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 603239 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 838961 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 1081517 21306606 ~ 21310605 (+) True G100507
AMCG00015757 mRNA upstream 38559 20136688 ~ 20145630 (+) True AMCG00015757
AMCG00015754 mRNA upstream 72250 20110705 ~ 20111939 (+) True AMCG00015754
AMCG00015756 mRNA upstream 145782 20035348 ~ 20038407 (+) True AMCG00015756
AMCG00015747 mRNA upstream 215847 19960544 ~ 19968342 (+) True AMCG00015747
AMCG00015748 mRNA upstream 278551 19867869 ~ 19905638 (+) True AMCG00015748
AMCG00015759 mRNA downstream 49854 20274943 ~ 20299858 (+) True AMCG00015759
AMCG00015765 mRNA downstream 259798 20484887 ~ 20501432 (+) True AMCG00015765
AMCG00015768 mRNA downstream 330786 20555875 ~ 20556255 (+) True AMCG00015768
AMCG00015766 mRNA downstream 361781 20586870 ~ 20619770 (+) True AMCG00015766
AMCG00015767 mRNA downstream 397704 20622793 ~ 20656527 (+) True AMCG00015767
TU125009 other upstream 1412223 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 1858285 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 3052440 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 4052802 16131044 ~ 16131387 (+) True G99624
TU124310 other upstream 4382555 15796950 ~ 15801634 (+) True G99541
TU125356 other downstream 42318 20267407 ~ 20268285 (+) True G100338
TU125724 other downstream 2455121 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4640000 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 6038826 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 6148064 26373153 ~ 26377699 (+) True G101275

Expression Profile