RNA id: AMCG00015765


Basic Information

Item Value
RNA id AMCG00015765
length 2682
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00015765
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20484887 ~ 20501432 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCTCACAGCGGCTGAGCTGTTCTCCAGAAGCAGATCCCGGCGCTCGGAGCTGTTCACGGATCATGTGGTGCTGAAAGCCGGGCCAGACGCATCTCCTGGATGCCGAGGCGACAAACGGCTCAGTGAAATCTATATATGCAGTGCGCTCTGGAAAACAGAACTGACTATAATGTCAGATAAATGTACTGGAATGTGTCAGAAAGCTCTCCTGTATTCCTTGGTGTATTTTATCAGCATCATCGTCTACACACTGTCAGAGGAAGCACCTCCTTTTCTGCACATCACCTGGCAATTCGGATCCACCACAGTCATCTTGAAGACCATCCGCTTCACCGAAGGACAGGCGTCAGAAGACCCAAGCAAGACCTACATCCCCTTGCCGAAGTATCAAGGCCGGGTCTCTGTCTTCTCCCACAATGCTTCTCTCCTCATCCAAAACCTCTCTCTTTGGGATTCAGGGACATATACCTTCACGGTCAAAAACTCAAACACTGCCATCACCAAGGTGCTGAGTGTGAACTTAACAGTTTTACCAGATATAGGAAATCACAATCCATATGGAGATCTGGAGCTGAATTCAACAGACCTGACTTCTTGTCAAGGCTCGCTGTTCTTCCACAGCACTGCCGGGCTGGCCATCACCCTGCGGCTCATCTCCCTCGGCATCTCCTTCGCTCTGCTgtccttcatttatttcatgGCCAAGAGAACATGCAACACAGAAGAGGATTTCTTTTAGAATACCCTAATAAGCCCTGCCACAGCTCAAAACCAGCCGCACAAGACACTGAACACTGACACTGTTTGGAAAAACGCAGATTCAATTAAACCCAAGAATCGTTTCtggattgtttattttgttgttgtggtttttggtttgtgttttttgtatgagATGTATAAGATGGACTTGTATAGTTGTGttccatacaaaatataaaaacaactcAACAAGGGGAactggggttttgttttttgggggtgaAACTTTGTGTATTTCCTTTAATATAGTTTAAACCCTTGACATAGTGGCTGTTGTAAGTATTTGAACACCACAAACTGTTTAAACCAACCCTTGCTCAAGTTGCTCAGCAGTGTACAGCTCCCAGGGAGTCACAGTTCAGCATTATTGTAGTTATCTAAATGATCAGTGGTTTAATGCTCTGAAGcacttttaaattaatctctTAAAGTACACAATGGTTTCCCTGAAGAACTCGAATGCACcagaaaaaagtacaaaaataaaagatgccTCCAAGACCTGAAGCTACACAATGCTGGGTTAAGAATCTCTTTCATTCAGAGTAATAACACTGGTAACCCAAGAACAGTTTACTTGTTTCACCACACTTTTTAATCTGTTCCCTTTGCCTGATTTACTGTTACTTTTAATTGGATCGACCTTGAATGTAATCAGATGCAAATGTAAGCAAATCCACACGGCCCTCAGCTGGTACGGCTGGTAATGTTTGATgcgggaaaaataaataatgatttaattacttCTATACATAATAGCTGGCAGGCCCGTTTAGAAAGCACGACATGGTTAATGCTCGCTTAATGCGTTGGCTTCTGATGTTTTtagactgaaaacaaatgtgttttcctgCATGTGAGCTTTAAGGGGAGACGGGATTAAATGTGATTGCAGGATACGACAGTGAATTAATTTCAGACTCCTACACACTTGCCTTTTTAGAGATGGCTCTCACTTCAACTTGTAAGCATGACACATAGCTGTCACATTAAATGCCGACTGCCACTCTTGTGTCACTTCAAGCTGGGCAGGCTGATTAAGTGAAAGTGTCAGTTTAAATGGATTGAAAGTCTGATTCTGATTTACGCTCATTAAAAGTGAATTACAACAGTAGACTTTTAAGGGTGCAATTTGGTGAGGGAACCTAATTCCCCTGGATTTGCAACTTTAGCCCCATAAGTGTGATGTGCCTGAGAATTGGCTTCTATTAATGGCTGGAACATAAGTCTCAGTGTTTCAGTGACTTTCTCTCACAAAAAGCATGAACTAGTGCTGCTTTTGTACAATCATGTGTACGGCAACAACCATGTTTCATTTGACTTCTACTCCCAGACACAGGTTTggacacccttcatttgaaccAATGTAGTTTCTAACTTAAGACAGGTATGCACACATCATAACCCACTTATATCAACTGGAATATTTAGTACTAAATGCTAGGATGTGTCAGCGTTTATTAAACTTTAATACAGTCGTCAGGCACTGTACTTTTCTTCCCATTTGGGAAAGGATAGGATTTAAATATCACTGCAATTGTGAACACCTAATATCTACTTCCAAAATAATTATTAGTTAGATCTGGGTGATTAATTAACTACCGATCATTAACTATCAGTGTATACAGACTTGGAAACATTGCATTGTGATCAATGAAATGGGTGTTTTGGGCAATAACAGACAGATAACCTGCAACAGGTCTGTACACCCTCAAGGTACTGAGTTCCCTCAATTGAACAGGTTTCTTTTTTATCAAAATAACTAAGATGTACTTTGAATTTTGCAGTATCCATTGCAATGCTACATCACTCTTTGTATCCTTACATAAGTGTGTGATACATCATATTATGatgtaaattgtttttcatattgtacATTTCTGAAGCTTGTAAGTCACCTTTGATAAAGgcaaccaat

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125368 lncRNA upstream 157720 20324610 ~ 20327167 (+) True G100349
TU125233 lncRNA upstream 702124 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 709597 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 754323 19726572 ~ 19730564 (+) True G100241
TU125231 lncRNA upstream 755359 19728656 ~ 19729528 (+) False G100241
TU125492 lncRNA downstream 277914 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 326896 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 562618 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 805174 21306606 ~ 21310605 (+) True G100507
TU125610 lncRNA downstream 1312939 21814371 ~ 21814715 (+) True G100568
AMCG00015759 mRNA upstream 185029 20274943 ~ 20299858 (+) True AMCG00015759
AMCG00015758 mRNA upstream 259798 20184189 ~ 20225089 (+) True AMCG00015758
AMCG00015757 mRNA upstream 339257 20136688 ~ 20145630 (+) True AMCG00015757
AMCG00015754 mRNA upstream 372948 20110705 ~ 20111939 (+) True AMCG00015754
AMCG00015756 mRNA upstream 446480 20035348 ~ 20038407 (+) True AMCG00015756
AMCG00015768 mRNA downstream 54443 20555875 ~ 20556255 (+) True AMCG00015768
AMCG00015766 mRNA downstream 85438 20586870 ~ 20619770 (+) True AMCG00015766
AMCG00015767 mRNA downstream 121361 20622793 ~ 20656527 (+) True AMCG00015767
AMCG00015773 mRNA downstream 259398 20760830 ~ 20774620 (+) True AMCG00015773
AMCG00015775 mRNA downstream 301265 20802697 ~ 20802933 (+) True AMCG00015775
TU125356 other upstream 216602 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 1712921 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 2158983 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 3353138 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 4353500 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 2178778 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4363657 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 5762483 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 5871721 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 7389120 27890552 ~ 27992014 (+) False G101400

Expression Profile