RNA id: AMCG00015766


Basic Information

Item Value
RNA id AMCG00015766
length 9126
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00015766
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20586870 ~ 20619770 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTACAAGCTGCACTCCAAATCtgggaagaaggagaaggagcgTGGCGAGGTGCAGGTGACGGTGCAGTTCACTCGCAACAACCTGACGGCGAGCATGTATGACCTGTCCGTGAAGGACAAACCACGCTCTACATTCGGCAAGCTCAAAGACAAGATGAAAAGCAAGAAGCGCGGTGAGGAGTCAGCATCTGCAATCGTACCCAGTGGCTACGGGGCCCTCTCTGGGAGAGTCAGCCGGACAGCCAGCGAGGGGGGTGAggtggaggaggatgaagaggagCTGGGGCCCAGGGAAGGGAAGAAGAGTAAGATGAAGAACTTCTTCCAGAAAGCCAAGCTCCACAAGTCCGCGGACACCCACTCCAACACCTCTCTGGCCTCGGAGAGCAGCGTGTCATCCTCCCCAGGGGGCAGCCTCAGCCCCACAGCGGGAATCAGTGTGGTGGTGTCTGATCTCTCCAACTCCcccagcaacagcagcaacctCACTGTGGACAGCCCTGTTCACACGATCCAACCCTCCCCTAGACTGCCGACCCACAAGCGAGCATTCAGTGACGAGGCAAGCCAGATCGCAGCCACCCAGCCCCAGCCCCGAGCGGTGGAGTCTCTGAAGGCCCGCAGCGGTGTGCTCTCCAAGTCCTCGCTCTGCATCAACGGCAGTCATGTTTACAATGAGCCGACTGCCCCGGCCCCTGTGGCCCCTCTGCCCACCACTCTGGGACTTCTGCAGAagtcctctccactctcccGCTCTCTGCAGAACCTCACCAAGAAGAGTGAGGACCCCCACAAAGCCCTGACAGACGCCCGCCGCTGGTCCCTGGACAAGCCGGAGAAGGAGCCTGCAGACCAACTGAGCATCTCAGCCCAAGAGGGTCCTGGGAGAGGCACGATGGCGCACAACTCCGAAAGCAAACCGGTTCACGTTACTGTGCCAATGGTCTCCACAGCTGCGGAGTCGGGTACAGATGGGAAGAAGCATAGGCTGAACTTGTTCTCCCACGGCAAGGGTGACTCTTCTGGGAAAGGAGGTGAGGGTGGGAAGGGTGCCGAGCCAGGCAGTGGCCAGGCCCACCCGCCCTCTGAGGAGAAGCACAAGGCTTGGTTTGGCTCCAAGGATCCCCAAAACAAACCAAGCCTGGAAGTGTCTCCTAAGGTAGAAACCAGCTCAGACGCACCCTTTCACCTCTCACCTCGCTCCCCTGAccacctctcctctcctcctcctgcttctGTTTGTCCATCTTCACTTGGCAGTGTGCCTCATGCTAACCCATTCACCTCCTCACGGGCCACCCCACCCATGTCTCCCTCCAACCCCTTTTTCACCAGTATCCAGTGTAACCCCTTCTTTGAGGAACTCCTAGCTGACCAGGCACTAAAACCTGCCACACCTGCTCCCTGTCTCTCCAGTTCGACTGTCTGGGCTTCCCCACCTTCCTCTGGGCCTGGTGATTCCACTTCAACCCAAGATGGCATATGGCAGAGCTCTGACCTTCCCAACGAGAAATCTATTGGTTTAATTGGCAGGCAAAGCTCAGAACCTGCAGTGTCTTTTTCAAGTGGAGAGATCTCAAGAGTTGCCGCCACACCCTGCCTGTTCTCATCTTACTCCATGTCTGAAGCTCTGGGAGAATGGGATGAGTCTTTTGATGCCTTTGCTGCCAGTAGGCTTAAACCTGCACAAAAGGATAAACTCACGTCACTGCAAGAATCCTCATTCTTTCTCCCCTCTTCACCTGGGCTGAGTTCTTGTCCTCAGGAAAGATCAACAAGTGCAATTATTGGGAAAATTGAAAGTGAAATTCTTCCATGTTTTGTACAAGCTGGAAATGCCCCACCTGTGCCTCCACGGAAACCTCTGGGAGCTGGTGCTCAGGAGGTGAGGAGAGAGAGCTGGCTAGACCGAGCGCAGGAACTGACCGTTAGGAAAGAAGCAAGTCTGCTGTCTCAAACGGATGCTGCTTCAAAGCATTTTCACAGGGAAGAGCAGcgaaagaaagaaatatgtttATCACTGAATTCTTTAAGGGGAGAAGTTGGCATTTCTTCTGCACCTGCTAAAGAATCCTATGTTGCATTACAGGATGAAGCTGGAAATAAAGATGCAACATCTGATTGTAACAATTCACCCACTGATCTGAATGTGACGCCACAATTTGTGAGCACATGTTCAGTAACATTCATGAATAAATCTGTCATGAAACCAAAAGCAGGCAATATTAACCATCAGTCCCCTGTCCTGAGCGTCACCAATTCCTTGGAGTATccagaaataaatgaagaaatggTAAAGGAGTCCTCTACCTTGGACCCAGAAGGCAGCAAGGAGACCTTAGGAAGTGAAGTTACTAGCGGCACACAGACATTATCTAAAGAGGAAATTGGTTCTGAGGAGTCCGAGAGAAACGCAAATAGTTCACACGTCTTCACACAGGAAACCACTGGGAGTACAGGTAGAGTGACggacaaagaaaaaagcagcCCTGCTACATTTTGTAGACAAAACATAGACAATAAGGAAGCTCTACATCCTGCAACCGAGTTTACTAAACCTGAAAGTCACACGCAGGGGTCTGGTGTTTCATGCACTGAAACCTCAACTGTGCCAAGGTCCATTGTTGTAGGCCCAGTACAGTCACTCTCTGAAGTCTTAACCAAAATATCTGAAATCACTGCCACTAAGTCCCCTAACACAGCCCTTGGAGTGGCTAAGAATACACCAGTTAGTAGTGCTCCTGATTCAAATGTCTCCCCTGATCTTAATACACCAGCTACGAATCCACACAAGTGTCTTGGTTCTTTCACAGAGCTTTCTGCAGAAGCACTACAGCCAGCCAAGTCACTTGACTCCCCTTCTGTAGATTTTACAAGTGCCCTTGAATGCAACAATAATGCAATTGAAATGGTTACCAGTCTTTCAGATAGTGACCCTTTTATGGCAATTGACTCCTCACCTGAAGTCATAACAAATGAGTTTGACTCATATGAGCCCAAAACACTGGAATCATTCACTGAGGTCTTCACATGTGCTTCTGCTGCCAAATTAGTGGATTCTTCCAGTAAAGTTAGAATAGATGCATCATTTAGTGCTCCTACCAAGACTGATTCCTCTGCTGTAATTGTCATTGATACACCAGATTCTCTAGCACTCATGTCTGTCTCGGAAGGTAGCCTAGACATCCCTCGGGCCGAAGCTCtcaagccattttttttttcccaaacccTGCCAACTGTAGATGCCAAGGCAGATCAAATGACTTCCCTAGAAACTGGTATACCTAGAATTATATCAGATGGCAGTATTACAAACCTTCCAGCCTCAACACTGGGAGGAAGAAATGAAGGATCAAAAACCAACTCGGAGAGCTGCTTGAATACCGAGAGTTCACCTGAACTTACAGATCGAGATTTAAATGTGGACATAAATTCCAAACTAGTAGAGGAGTTGAAAGCCAACCTCTTTGCTCCATCTGCCAGCATTTGCAACACGCCACAAGGGGATGAACAGAGTACCAATTCCAAGACCAACCTGTTCTCTTGTGCTACAAACATTAGTGCAGAAGGTACTTTTGTACTGCCCGTTCAGTCTACTACAGCGGCTGATACCACAAATGTACCTGTGCTTGATGTGGATTTAATGACTTTGGACCCTGCTAATGCTTTACAAGAGGATCATGAACAAAATCCcagcaatttaaatgtaatgcaggAGAACTCAGTCGTACCTTACTATATGGAAAGCACAGCAGTTACCAATGATTTTAAAAACTCTAACATTCCAGAAGCCCCTTGTCCTGCTGTAGATAATGAGACCACAACAGGTCAGTCCTTGGGAATATTGGGTGATGCTTTCCCCACTAATACAGATTATTTGGCCCTCAATTTGAAAGGACAAAGTGTAGCAATACCTTTGGGACCTGAACCAAAACCTGAGAATCCTTTCATAGATATTTCTCTGACTCCTAACAGTTCCACCCTTCTATCAAATGCCCCAAATAAAGAAGTTACTCTCCTATCAGAAAACGAGCAGGTGAGGAAGCCACCGCCCAAACCTCCTAGGCTTCTCGCTGAGCATTTCACAGACAATGTACTGGATTCTTGCTTAAATAAAGTGACTGGTCTTATGACCGTAGAAGGCACCCTAAAGAAAAAGGACAATGGAGAACTTGAAATACCGGTGACCGGGAGTGTTGTCCACAGCTCCAATGAGGTGACCGTTTCAGACCATTACAGAACTTGCAAGTCCAAGTTTCTTCAGGAGGGATCAGGCCACGCAAATGTTGAAGAAAAGGTAAAGATGAGGGATGCTCATGCTCCTTCCTCACCTTTTGAAATCATTAGCAGTGACCAGAGCATGGAAGCATGGCAATTGCAGCCTGACTCTTCCCATACTGAGTTTAAAAGGCCCTTATCAGGTGATCTTGGGGACAGTTGGGATAAAAGCTGTCTGAAAAATCAAGGCAATTTCAGAGTCAAAGAAGAACTTAACACCTCTGACTTGATGTTTTGGTCTGCTGAAGAACTAAAAGACCTGCCTGCTCAGCTCCAGGAGTCCAGCAACCACAACAAAGAAGTCTACTTAAATGAGAGAACATATTCTATTCAGAACAGACCAGCTCAGCCTGACAACTTGACAGCCACTCTGCAGTCAAATAACCCTTCTCCAGGAACTGCTGCTAAAAATCAAACCCAAAATGAAGGAGACATGCTCCAAGTATCTGGGGAAAATAAGCTTACCGTTTCTAATCTGCCAATGTTTTCTGAGTTGCTAAAAAACAAAGATCAGGAACGGgcatctctctcacacacacccactccCAGTGATCTTTCCTACATGGTTTCCCAGGATCCCGTGATAGAGTTCAAGCCAGACGACTTTGGCAAGCCTCAGGAGGAAGATCTGCAAAAACCTCAAACAAAGGGTGTTCACATGGAAAATCCTTTAGCATTTGCCATATCACTTCCGGCATTCAGCAAGAACAATCCATTTTCCACAATCCCAGGTACTGATCAGCTCTCCTCTTCAGTGTCCCACCATCGGAAGGAATTGGCCTTTAAAGACCCTCAATCTTGCTGGAACAGCCTTCCAGAAGCCCAGATGTCAAAGTTCCTTGTGCATGACAGTACCCCTCTGGCTTCTTCTACCCCCTCCTTAGTGGCTGCAACTAACTCCGAGTTTACCCACTTCCCCTCCCCCATCCTGTCCTCTTCGACTGTGAGGCCAGCAGCAGGGACCACCCAGGCAGCCGCCCCCTCCTCCTTCCGCCCTCCGCCACCGATTGCTTCAGCGTTCACGGTTTTGCCCGAGGAGACACAGCCAGCTGACCACTTCCTGCAGAGTCACAAGAGCAGCCCCCATCCGGTGAAGCCGCTCAGCTCTGCTGCCTCccaggaggagaagaaaatggACCGGTCAGTCCTCTCCAGTGGGCTGGAGAAGCTCAAGTCCACTATCCACCCAGCGCGGAACACAAAGCATGGTGATCCGGAGGCTGAGAGGCTGAAGATGTCCACCGATGGGGTCGCCCGCTATTACCACCTGACCCACGACGAGCTCATCACCCTGCTGCTGGAGCGGGAGAAGGAGCTGGAGAAGAAGGGGGCCGACCTGCATAAGATGGCCTTGCAGGTGCGTGATCTGGAGGATTACATCGACACCCTGCTGGTGCGTATCATGGAGCAGACGCCCACCCTGCTGCAGGTCAAACCCACGGGCAAGTAGAGGGGAGAGACCCTCCATCACACCACATCCCCTTGCCCTCCCGGCCTGCACTCCAGCTCACCCCCACCCAGGCAGGCCTCAAAACAGCAAGGCAGAAGCCTCAATCGCCTGCCGGAGCTTCTGCTTTACGTTTGCATGCTTTCTTCCTCCATCGCCGGTGGGTGAGCAGACTCTCTCAGATtggattttctttcatttttttccttttgtaatgcCAAATCCAAGTTGGACTAGTATTAAGAATGGACTCTTCCAGGTAAAGAACTATTCCCCCACCTCCCCTGGCATAGCCACCATGATTCAGAGCTCTTCTGGAGagtatttttttggggggaggctGTCTTCCAGCACAAGCATGTCTTCCTCATGAGGGGGTAGTGCAAAAGGGTTCATTACCTTTTGCTGGTATTTGGAATCTTTGAATGTCATGTATCTCTGATTAATGAGCTACAAACCAAATGAATttggagcaaaacaaaaaaaaaattgaatacatgAACTGTTATGAAGTTGCATCTTACCTGAGCTCATAATGCATTAATTCACGTTGCTGCACCTGACGTCAGGTAAGTCTGCCACTGTGCACCCATTCCTGACCACATTCCTTTTGCTTTTTGCCATATTTTAAGAGAACAAAGCAAACCTAgacaaaataaagcattctCTGCTAACTAATCTCTGAATGCCAGGCAGTTTACAACTATAACAATATGACACCGAATAGATGCAGCACCCTGTGGGACACTTAGCTGTTGCCTTCTTGCAGGTCATGTGACCGACATGATTGTTAACCACTTTGGGCAAATGCAGGTTCACTTCTGGTAGCTCTGAATTTCTACTAGGAACACATTTGATCTATATCCTACTGTTCTTTACACTATGTGAGATCCCCTTTGCTTCAGCTGAATTGCATATAGCTATACTGCTGTTAAGTGTTTGAAATGGAAGGGAAATATTTAACACCATATATGCCGTATGGAAATGCCAAATGCTgccttattgttttttgtttttccctcagTTTCATcacctattgttttttttttttttttttagatttgagcttactgttctgttttttggagagaaaaaaagatttaaagcCATGGTGTGAATATATgtaaagtatttacaaaatacacGGGGGATATAGGCAAAATACCAAAAATAGCAGTTGTTCCATTTTGTTCCAGGCCTTTTCCAAACAGTGTGACCCTGTGTTAACAAAGCACCTTTTCCTTTTACTGTTACAAGTATTGCTCAACTGGTTCAGACCTGCGTTCCACTTAAGTCAAGGGACCAGTAAATTGCCAAGGAGCTGATCTGTATCTCTACCTCCCTTCTTAGGGTTTGGTGTAGAGGATAAACTCTGTTGGGTACAGTTTTAAAAGGGTTGCTTACAAATcctccaccctcctcctcctatGGAATTCTCTGTGGCATATTCCATACGTCCCTCACATGTCATAATCACCCCTGCACTTTACTACAGCACTGGTGAAACCAATAGCAATAGAATGGTGTAGATGGCCGTTCACATCTCTGTGGTTACCTGTGTGTTCATGGAGGCGGAGTCAGAGGGGGTTGCCATTTCCACACCTGCACACACCTGACTGCACTACGTCTCTTATTGCCACCTGTGAAGTGCCATCACATGCTGTGACTGGTTCCTGACACCTGTTAATGCAGCCACTGACCATTCGAGTCCCCTGAGGTCTTCTGACTGCATTTCATGGGTCTGTATTCAcctgcagcagcagtgtgtAATAACTGTATCTATGATGCAGATCTAAAGCAGACCTTGTATATCTAACTGGGTCCGTTGAGCTTTTGAAGCCACTTCTAGATCACTGGATGGGCAGGTTCCAGCACAGGGCTTGCATGGTTGTAGATGGAAAGACGAGCTGCATTTTGTAATCTATTTTAGAGGTCTGCGTGGCTGTGAGAGAATTACACCAAGATTGAActaataacattttgatttgggttgttttttattattttgtttgttttaaacaaaaatacagagtGGGTGCCAATAAAAGCACATAGTGCAGCTTTGGAAAAGatggaaaggaaaaacaaaaaagctaaagTTTACAGTTGTATTAAAGTTTCTGttacactgttttatatatttaaagaatgttttgcttatttgttcATATAAAATTGCTATAACTTTttgttgtattaataaaattatCTATGTTCAGCACTTTGCAAATAAAAGATCATAAAGCTTTTCCGCTGGGTTATGAGTGAAGTACTTCGGAATTGGTTTGAGGGGCGTGTCCTGGATAGCCTTATAATGCTCTTTGCAGATATAGGAGCAATTCCTCACAGTTTATAACATTCCCCAAAGTGCTCATATATCTTAGATTTAAGAGATTTAAGCTTTTGGTTTGGGTGACATGACTTTAATCTGTTTATTGTGGGGTTTGTATGTTATTTGTAGAGAAATAACAAAGCTATTACAAATAAAGTTGcccattacacttttttttttttgtatacattttgctgttgcttttaaaattagattttctgAACTGATTTACACCCCAAAGACCACCTGTCAAATGCAGATAATGGTGTTGTATATCTTTCTGAGAAGCAGTATTGCCCACTGCCCTAACTCACCTGCATGTCACCCTTTAAGCTTTACATTAGTGGAAACAAGTATTCAAACTTGCACTTCTCTGCTCGCTCAAAGCTGAAATTCTATTAATAGATAAATAGTCTATTGCAATGAATCAGTGTCACTTTATTATCAGAAAACTGTGGCTTGAATTGCATAGAGACATTAAGCCGCTTCATAGCAGTAACTATAGTGTACTGTCATAGTTCATTCACAGACGCAATATCAAAGTATTATCAAACTAATGCAGtctaataaacaaaaaatgtaagaagTCATTGCTAtagatttattgttattaaagaTCAAACTTCGGTTTGGAAAAGAGCTTTCATCTCCAGTTGTGTTAAAGCATTTGCATTAAGAATACAAACTACTTCCACTTTGAAATTCATTAAACGCTCAATAGCACACACTGCTGTGATGTTCATCCACTTGATGATGATGAATGACTACACTTCTAACGAGCATCAATGTAGGGTAGGAAAAGTAGGCGAAGGACTGATTTTAGACCGAATTAAACTGAGGGGCAAGTCTCTAGGACGCTTTCCGTAAAGCATGAAAGTGTGCACAGGAAAGAAATGCTAGTGCAGTGCACGGGCATAATGATGGCAGTTCTGTAAATCGGTGATTGGATTTAATTTGTCTACAAGATTCAGTCTGCACCACAAATACACACTACTTGGCCCTTGGAGAGTATAATTGTCATGATtccatttgccttttttttttttttttttgtaattcccGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125368 lncRNA upstream 259703 20324610 ~ 20327167 (+) True G100349
TU125233 lncRNA upstream 804107 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 811580 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 856306 19726572 ~ 19730564 (+) True G100241
TU125492 lncRNA downstream 159576 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 208558 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 444280 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 686836 21306606 ~ 21310605 (+) True G100507
TU125610 lncRNA downstream 1194601 21814371 ~ 21814715 (+) True G100568
AMCG00015768 mRNA upstream 30615 20555875 ~ 20556255 (+) True AMCG00015768
AMCG00015765 mRNA upstream 85438 20484887 ~ 20501432 (+) True AMCG00015765
AMCG00015759 mRNA upstream 287012 20274943 ~ 20299858 (+) True AMCG00015759
AMCG00015758 mRNA upstream 361781 20184189 ~ 20225089 (+) True AMCG00015758
AMCG00015757 mRNA upstream 441240 20136688 ~ 20145630 (+) True AMCG00015757
AMCG00015767 mRNA downstream 3023 20622793 ~ 20656527 (+) True AMCG00015767
AMCG00015773 mRNA downstream 141060 20760830 ~ 20774620 (+) True AMCG00015773
AMCG00015775 mRNA downstream 182927 20802697 ~ 20802933 (+) True AMCG00015775
AMCG00015774 mRNA downstream 183227 20802997 ~ 20803854 (+) True AMCG00015774
AMCG00015779 mRNA downstream 427000 21046770 ~ 21053142 (+) True AMCG00015779
TU125356 other upstream 318585 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 1814904 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 2260966 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 3455121 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 4455483 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 2060440 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4245319 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 5644145 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 5753383 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 7270782 27890552 ~ 27992014 (+) False G101400

Expression Profile