RNA id: AMCG00015773


Basic Information

Item Value
RNA id AMCG00015773
length 2180
RNA type mRNA
GC content 0.49
exon number 14
gene id AMCG00015773
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20760830 ~ 20774620 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGACGTCACCGCCCGCCTCGATTGGCTCCCTGTCGGAGTCAGGGGTGAAAGGGAAAAGCTCATTTCAACATGGCCGCCCCCATCGGTGACATGTTTTCGTTCTGTGCGGATCCTGGCAAAGTTGGTAGCTCAGTTGAGGTCCGATTCATCGATAAAGTCAAGGGAAAGGGACTGTTTGCCAAGAAAGCCATCCGCAAAGGAGAAACCATATTCGTGGAGCGCCCCCTGGTGTCTGCTCAGTTCCTGTGGAATGCTTTGTATAAATACAGAGCCTGTGAGCACTGCCTGCGCTCTTTGGAGACAGCGGAGGAGAACGCAAGGCGGCTCAGTGGCAAGGCCGGTCTAATGCTGCCGTACCCCGAGCAATGCCGTGTCCGCCTAGACCTGCAACAGGCCTGCCCGCACTGCCAGgTGATGTACTGCAGCACTGAGTGTCGGAAAGCGGCTTTCGAGCAGTACCACCAGGTTCTGTGTCTGGGTCCATCCAGGGATGACCAGGAGCACCCCCTCAATAAGGTGCAGGAGGCCTGGCGAAACATGCATTACCCACCAGAGACCTCCAGCATTATGTTAATGGCAAGGATGGTTGCGACAGTTAAGCAGGCTCGGGACAAAGGCCACTGGCAGAGCCTCTTCTCTCAGTTCTGCAGCAGGACGGCTAATGAAGAGGACGAAATCGCTCACAAGCTCCTGGGAGAGAAGTTTCAGGGGCAGCTGGCATTGTTGCGGAACCATTTCACTACAGCACTTTACGACGAGCGTCTAAGCAAGCCAGTTTCCTTTCTCTTGCAGTGGTTCACACCTGAAGGCTTCCGGTCACTCTTTGCCTTAGTGGGAACAAACGGCCAAGGCATCGGGACCAGTTCTCTCAGTCAGTGGGTCCACGGCTGTGATGCACTGGAGCTGCCTGCCCAACAGAGGGAGCAGTTGGATGCCTTCATTGACCAGCTATACAAGGACATAGAGAGAGAGACGGGTGATTTCCTGAACTGTGAGGGTTCTGGCCTGTTCCTGCTGCAAAGCTCTTGCAACCACAGCTGCCTGCCCAATGCCGAGGCCTCATTCCCTGACAACAACTACCTGTTGCACATGACCGCCCTCTCTGATATCGCCCCTGGGGAGGAAATCTCTATCAGCTACCTAGATTGCTGTCAAAGAGACCGGAGTCGGCACAGCCGCCACAAGATTCTCAGGGAGAACTACCTGTTTGTCTGCTCCTGTCCCAAgtgtctctcccaggcagatgAGCTGGATGTAACctctgaggaagaggaggaggaaggcgAAGGGGAGGGCGAGACGGAGGGCGATGACCTGGAGGATGAGATGACAGACGTGTGACGGGCAGGTCGGCACACCAGCGCACACCACCGAAACGGCACCGAGTTGATGTTAGAACAGTGGAGGACAGCAGTGCCGACAGTGGGTCCGCTCTTCACATCCACAGAGCACACACGGGCTCACTCCACCTGCCTCATCCCTGACTGTCCTCTACAGCCTCTCACCgaataaaacattcattaaaactagaacacatttcacatcagatttttttttttttttttaactgtcgAATTTCTGTCCCTGTTATGTTTCTGCATATGAGATTCCAAAGAAAGAAGACCactttttaaacagatttaaaataaataacactcaTTCATGGCATTTGTATTAACTTTCCACTCCTGGCGCTTTCAGGTAGTGTTCTTCAGTGGGCATGACACAAGTTAGAAATTATGCATTtctcaaaaatgttttgtctaCCTACATTTGACTTCAGTTAACTTGAATGCATGACATGAAAACATATCCTGCAAGTTGTATGCCAATAGATTTTTCTTTACAGATTCTAGGTAAGTCTAGTGCTCTTGTCCCAAAGTCCAGTCTATTAGCATCTTATCAAGACTTACTTGCAGAGCATTTTCTATTAGACTGCTGTGTAAGCTAACCAGTATAATTCCTAAAACTCTGTTACATGAAGTCCAGTACTATATGCAGATTGTTTAACAAATGTCTTGGCACTGTGTTCAACTTAATGACTATTAGATCTGTCTATCATTTCAATAGTTACAGGCAATAACTAAATAGCTATTACTTTAAGAGGCTGGGACCATTCACAGTGTAAATATATGCCAGCTGTTCATAGGACTGCCTGCAGTATATATCATTGCCAG

Function

GO: NA

KEGG:

id description
K24635 SMYD5, ZMYND23; SET and MYND domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125368 lncRNA upstream 433663 20324610 ~ 20327167 (+) True G100349
TU125233 lncRNA upstream 978067 19728656 ~ 19782763 (+) False G100241
TU125235 lncRNA upstream 985540 19726572 ~ 19775290 (+) False G100241
TU125234 lncRNA upstream 1030266 19726572 ~ 19730564 (+) True G100241
TU125492 lncRNA downstream 4726 20779346 ~ 20780467 (+) True G100461
TU125516 lncRNA downstream 53708 20828328 ~ 20828614 (+) True G100483
TU125537 lncRNA downstream 289430 21064050 ~ 21065385 (+) True G100502
TU125542 lncRNA downstream 531986 21306606 ~ 21310605 (+) True G100507
TU125610 lncRNA downstream 1039751 21814371 ~ 21814715 (+) True G100568
AMCG00015767 mRNA upstream 104303 20622793 ~ 20656527 (+) True AMCG00015767
AMCG00015766 mRNA upstream 141060 20586870 ~ 20619770 (+) True AMCG00015766
AMCG00015768 mRNA upstream 204575 20555875 ~ 20556255 (+) True AMCG00015768
AMCG00015765 mRNA upstream 259398 20484887 ~ 20501432 (+) True AMCG00015765
AMCG00015759 mRNA upstream 460972 20274943 ~ 20299858 (+) True AMCG00015759
AMCG00015775 mRNA downstream 28077 20802697 ~ 20802933 (+) True AMCG00015775
AMCG00015774 mRNA downstream 28377 20802997 ~ 20803854 (+) True AMCG00015774
AMCG00015779 mRNA downstream 272150 21046770 ~ 21053142 (+) True AMCG00015779
AMCG00015781 mRNA downstream 382534 21157154 ~ 21224579 (+) True AMCG00015781
AMCG00015782 mRNA downstream 452660 21227280 ~ 21229655 (+) True AMCG00015782
TU125356 other upstream 492545 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 1988864 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 2434926 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 3629081 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 4629443 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 1905590 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 4090469 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 5489295 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 5598533 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 7115932 27890552 ~ 27992014 (+) False G101400

Expression Profile