RNA id: AMCG00015786


Basic Information

Item Value
RNA id AMCG00015786
length 8677
RNA type mRNA
GC content 0.51
exon number 23
gene id AMCG00015786
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22045949 ~ 22065359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCATTGTTCTTGGAAAGTTGTGTGCCTGTTGCGAATTCCTTGAACTTTGGCATTGGGAGCCCACTACTTTTGGGTCCTCCGTCTGTGCAGCTGGCCCAGATTAAGACTCAGCTGGCCCTGCACCAGTTGAACGCGGTCGCCTCTGGTAACCACACTGCGCCTGCTTTGTCCCTACTGAACCTTCTGAAGGTCACCATGTCCCACCCAATGTACAACCCTCGAGGTGCCTTCCCTGGCCAGAGACCCATGGTTTCCAACCAGTTTGGTATGAATGCTCCCCCTGGAATGGATATGGGTGGTGGATGCTTAGGCCCTCAAGGTATGACATCCACAGGAATAATGTCACAAATGATGCCTCAGCAGATGAGCTTCCAGATGCCCCAGCGCAACCCCCCTCTGCCCCCAGATATAGAGTCCTCAATAGACCTGCATATCCGCGGAGCCCGAGAAGAGGTACGAATGCTGAACCAAGTGCTACAGCAGCAGAAGCTTGACCCTCGGCTGAGGAAGGAATCCAGGGAAGATGTACTATCCCCAGGATCAGGATTTTCCGGTCAGAGGCTCTCTGCCAGGACTGAAGAACGCACCCCCGACTGGTCAGCCTACCAGAATCCACCGACCAAGCTCTTTGCTACTCAAGTGGTCCCACAACAAGCTCAGGCAACTAAGATGTTCTCATCCCTGGGGTATGGAAATCCTGCAGAGAGGATGCAAGCCGGAGGAGCAAGGGGGCCTTCAGAGAGCCATCCTGTACCGATGCCTGCAGAGCGGCGGCAGACCAGATACACCACTGAGAGTGCCACCAGTATCCTCGCCAGCTTTGGGCTGTCCAACGAGGACTTGGAACTGCTGAGCCACTACCCGGATGAGCAGCTCACCCCAGACAATCTGCCCTTCATTTTACGGGATATCAGGGTCAGGAAGGCGAAACGCAATTTTGGCGATTTAGAACATTCCCGACCCTCCCCTGGTGCCCAAGAACACCTCAGCAGTGAACCTCGCCAAAGCAAAGTCATAGACTATGGACACTCAAGCAAGTTTGGCTATTCCGAGGGCAGCTCAGAGACTTTCAAACGGGAGCAGCTGACGAAAGACACGACCAAGTCTAATTTTGCTTCCACAGGAGCTCCAACCAGCATGCCTTCCAAATTTGCGATGGATGCGGTGGTCTCCAGTCCATCCTTTTCAAGTGAGTCCAAGCGTGCTGCATCTTGCAGCCTGCCTAAGAAACTACAGATGGATGTGAGtaagcagcagcacagcagtAATGCCAAGACCCTGAGCAGCGTGAGAGATCCCACTTCAGACAAGCAGGCTGCTTCCAACAGAACCACTGCTCCTCATGGTACAAGACCCAATCTAGTCAATCTGGTTGAAAGCAGTGGAGTGGCAAAACCGGGCTACTCTGCACCCAAACCCGCCTGGGTTCCATCATTCCCACACGGTGATGCCTCCGCTATGAAGAGACTGCCGACTCCAACCATGATGAACGATTACTACGCAGCCTCCCCAAGAATCTTTCCCCATACATGTTCTCTGTGTAACGTAGAATGTATGCTGATAAAGGACTGGATAGAACATCAGAACAACAACCTTCATATTGAGAACTGCAGACGGCTACGCAAACAATATCCAGAGTGGAACCCGGAGGCCTTTTCAAGTTTGAGGAATGAGTCCAAAAGTACTCCTCCGCGCCGAAGCCCGAAGAGACGGAGCCGCTCCCGAAGCCGCTCGTGGTCCCACTCCCTCAGCCCGTGGCGGTACCGGGGCCGCTCTGGCTCTCGGGGACGGGGGCGGCGCTCTCGCTCCCGCTCCCGATCCCGCAGCTCCCGCAGGTACCGCCGCAGCAGGACGCGCAGCCGCTCCCCGAGCCCACGTTGGATCCCTCGGCGCAGGTCTCGCACCCCGCCTTCCCGTCGCTCCCACTCCCGCAGCCCCGGGTACCTGCGCCGCTCCCCCCCTCGTGGTTCCCGTCGGGTGAGCCCCCGCAGGCGATGCAGATCTTCCAGCAATGAGAGGCTGGCCAAGAAGCTCATCCAGTCATCAGGGCTATCCGTCTCTGAGAACACCACTTTGGAGGCCATGATGCAGTCTCTGGCTCCAGCCATCCTGGCAGAGCTGGCCAAGAAGAAGGCAGGGACCTCTTCCTCCTCTAAGACCAATACATCTGTCAGCAAGATCACTAAGAAGAATGAGCCTACAGAAAAACACGGATCCTCTGCATCTGGGAAATCCAGCTCTTCAGTTGCCAAGTCTAGCTCTTCCTCCATGGGGAAATCCAGCTCTTCAGCAGCAGCAAAATCTTCATCCAAGGCTCCAGCAAAATCCTCAAGCAAGGAATCGGACTCCACCAACAAAACTGTTAAGGTGAAGAAGAAGAGTGCTCAGCCAGGCAATTATTTGGTCCGTCTGAAGAATTTGCCCATCGATGTCAAGCACCAAGAAGTTGTTGATGCTGTAAAGCCCTTTGGCAAAATCAATAATACGGTGCTTTTAAAGGCTCTGGAAGAGGATATGGTTATAAAGGACCCCAAGAAGACACCCATCATCAAAAAGAAAGAGATGGCTGCTGCCAAGACTCCAACTACAACACAGACTACAAAGCCATCACCTGCTAAAAACACAGATACTACTTCAAAGAAGAATAAAGATAAAAAGTATTTCCAGGATTTGGGGAAGAAAGGTGTTGTGCAGATCTGTGGCCTTCCTGAAATTGGATACGTTGAAAGTGACCTCACTAAACTGGCAATACCATTTGGTTTTGCCACAGAACTCATCATCGTGCCCTCTCATAGAATGgcCTTCATGGAGCTGCCAGATATGCAGTCAGCAGAAGCTATGGTGAACATTTATAAGTCTATCCCTGTGAAGGTCAGGGACACTGAGCTGACCATTACACAGCTAAAAAAACCTTTTGATCTGCATGACCCGgagGCATTGTTCAAGCAGGTACTTGGACTGCAGAAACCTGTGGATGTGACTGGTCTGATGGAAAGGCTAGTGATCGTCTACAACATGCCAAATGGGCGCAGTGCAGCTACAGAAGTTCAGGTGTTAGTGAGGAAATTTGGCTCCATAAAGCAGTATGTTGCTCTGACTAACAAGattatttttgaaatgaagACGCCCAACTTTGCCAAGGCAGTATTTTACCGTTTCAAGAAGTTTCCCTGCATCATTCAGAACCACCCCCTCACCTTCTCTCTGCATCCCAAAATTATTGTGAAAGAGGAGCTCATGAAGGATAAACAGATGAAAGCCGAAGCTAAAAGCATCAAAGCTGGAAACAAAGCTCCAGAAGGGACAAAGAAAGCTGCAGTCTCCTTAAAGGCGAAGCCAGCAGCTCAAGGAAAGCCACAGACAACACCTGCAGTCACCCACGGGACAGGAAAACCTGCCCAGCCCATTGCTGTGGCTTCTACTCCTCCGACTCCCACAGGTTCAGCAGCTGTCAAAAAAGCACCCACTGATGGTCAAACTGTAAACACTAGCACTCCTGCACTTGCTCTCACACCCCCCAGCTCCTCCGCTGCTGCCGCCGGAGCTGCAAAGGCCAGTGAGCCTGCTGTTAAGATGGAGACCACAGCATCCAGTCAGCCTGAAACTGATGGAAAGTCAGCAAGTCCTCAGCAGTCACCTCCCATTGAAACCCAGCTTTCAGTCCAGTCTGTGGACGCTTCTGCTTCTGAAACTATTGAGAGCAGCAAGTCGCTCCCTGACACAAACAAGAATCTGAAGGTGACAAGTGACGAGACGGCAGCCAACAAGGAAGTGTCCCAGATCCTTCCTGATGCTCGGTCCCCAACAGAAGATGCAAGCAAGCCACCTGCTTCTACTCAGTGTAAAGAAGACAGTGTATCATCAGCAGATCAAAGTAAACAAGTAGCCTGTGCCCAACAGCTAATAGATGGTTCAGAAAAGAAAGATCACAGCAGTCCAGCTGGCATCGGCCACACTGAAGTAAGTAGTGAGTCGCCTCCTGTTGAGGAAAATCTAACTTGTTCTGCTGCTGGCAAATCTGATGGAGAAATTGCAGAAGGCCCGAACAGTTCTACTGTTGTCAGTCTTATCAAGGAGGAAGCTAATAAGTCCTCGGATCAGATGCCTGTTTTTACCCCAATTCAGGAAAAAACTAATGAGGAAACTGCAAGAAATCTCGGTGATTCACTGAATAAGCCTACATCAGAAACTAATCGGAAGAGTCCAGAATCTAATGACCCATCTGTTTCAAGTAACCAAGCCAGAAAGGTTCAGATCATGACAGTAGACAGTCTGTTTCAGCCTGACAGTTCTAAAACAGTATGTGCAAATGACCCAGAAGCTTCTAGCAAATCTGCAGGTTCTGTAGTCTCTTGCAGCCAGAGTATAGAACTCAAAGAGCCTATGGTTAGCAGCTCCAGCATCCCTGTTTGTGACAAATCTGCCATTGCAGTCAATGCAGTCAGTGGACAGCCTGTTGAGACTCAGGATACCTCTGTTCCAGTAAAAACAGTCACAGAAACCAGCCCGGAGCCAGCGAAAGTTGTAGTCCCAATTGCACCACTTGGAAAACCCAACGCAGATAAGAACTCCTCGGACACTGTATCCAAGGACACTTCAACCAAGATGTCTGGGCCTTCTGTCACCACGGCAGCCTCCAGCGTAGCAGAGAAAGTCCCCACAGAGAGGCTGAGCCTACTACCGTCAACCCCCGCAGGGAACCCTGCCCAGGTGCGACGAGAGGGAGCCCTTGAACTGCTTGAGGACGTGGACACAAAGCCCCTGGACTTCCCTCCGGTGACTGAGGAGATTCTGAGAGCCCTGGAGGCGGCTGTTCACGAGTGCCGCATGCGCTCTTCCCTGAGGCGGGCCGAAAACAGTGGGGAGCAGCCATCTCAAGGAGGCGAAGAAAGCAAAACTTCTCGGGGCCGGGGGGGCAGCAAGGCAGCAGGCAGGAGGGACGAGCTGCCACCAGACCGAGAGTTGAGACGAAGGGGCAGAGGTCTGGGGGAGGAGGAGCTAGAGGTGGCCAGGCCCAGTACAGCAAGTAGGGGTAGCTGCGCAGGGGGTCGCCGGGGCAGGCAGGCCAGCAGCCCCAGTTCGGTTTCCAGGCGAAGCAAGGAGCATGATGACAGGGAACGGAGGTCCTCAAGCAGCGAGGAGAGCAAGCAAAAGaGTTGTAACTCTGGTAGATCATCCAGGTCATCAAGGAGCAGTTTTAAAGCACAGGAAGAAAAGATGACAGAGAAGACTGCTGATTCGGGTGACATAAGTGATGAAATGATGGGCATGTTCCCCTTTGATCTGGATGAGTTTGTCACTGTGGATGAGGTTGGGGATGAGGCAGACAGCCTCTCACAGGAGCAGGAACAGAAGCCCGAAAGCGAACCGTCTGTAGGAGAAGAGATGCCACCCCAGCACCACACGACGCCCGCCACGGAGCGTCCCGGCAAGCGCAAGAACACTGAGGATACAGCAGCCCTACCAGGCCTGCGCTCCAAGCAGCCGAGAACTGGAGTGACGGTAACGGGGTCACCAGCAGGCCGGTTGCAGAAGAAACCCACACTTCCAGCCCAGAAGCCACAGAAAAAAACGTCAGCTGTTAAACctaaacaacagaaaaaaggaGCTGGGAAAGCAGGAGCCCGCAAGACGCGTGCCAAAGCAGCCGCTGCGGCTGCTGTAGCTGAAACTGCCCTGGAATTGGAAGATGAAAATGATATGGGAGAGGACATTGAAGGCAAACTGGAGGAGAGCACCGGGAGTGTCCCCGAGGAGATGGAGGAAGGACAACAGACTGAAAGTGAGTCTTTGATGGCTTCAGTCCACATTCAGGAGGCAGAGCTGGGACCTTCTGTGCTGGCAGATGAACATAATTCAGTGGCAGAGGCAGAATTAACAAAATCTCTGAAAACAGAGGAAGCAAATCTGGTACCAGAGCTGCAGAAAGCTTCAACAGCAGATGAATCACAGGGTATATCTGTGGCTCCGTCTGGGGGAACTGAACTAAAGACTGCACCTTTCGCCTCTGCGGTAATAGAAGGCATCTCAAAAGTCCGAGAGCAGGAAGATTCCGTGCCTGATGGACAGGCAACCTCGAAAGATGAAGGGGCTGCAGCCGAGAGCCCGGGCTTGGCAACCGTGGCATCCATGGCGGCCGCTCTGGTGACGCTAGACGAAGtcagcgaggaggaggaggactaccctgatgatgatgaagaggaCCTGCTGTGTCAGGGCTTGGGAGGCGTCAGTGACCCGGAAGCGCTGGTGACCGTGGACGAGGTGGGAGGCGATGAGGACCCTTTCTTGCAGGCTGTGAGGGACCTGCAGGCCCTGGTCACACTTGATGAGAtcgtggaggaggaggaagaggagagggcGGGGAGCTGCAGAAGTGCTGACACTGAACCCTTCCCCTTCGGACTCCAGGATGAGTCTGGGGACGCCTTCCCTCCAGAGCATGCTCTGCTGACCCTGGATGAGACGCAGTGTGATGAAGAGGTGGAGGAAGACAATGAGAAGAGCCTAGACCAGCCTGAGGAAGTTCCACCCCCACCTTCAGACACAGCAGAGCCCAGTGAGCAGAAGGAGGAGCCTCcctgtgaggaggaggaggaggagggcctGGAGGAGTTGCGCAGGATGAACTTTGTTACTGTGGACGAGGTGGGAGAGGAAGAAGAACTGCCACCTCCTATGGAGGAACCACTCCCCGAAGAGGATGCCCCGCGCCCAGCCAAGCAGAAACCCGGCCGGCCCAAGAAGAGGGGTCGTCAATCCACTGGAACACCAGTGAGGAAGTCGGCGCGAGGCAGGCCACGAGCTGCCAAAGCAGCAAATGAGGAGAAGGAAGAGCTGCCCGAGAGCCAGGCGGAGGAGTCGGTTACCGAGCCTATGGACACTCCACACTGCCCCTCCGCACCCCAGGGTACGAGCATCTCCGTTTCACCTCTCCGAGACTCTGTCCAGCAGCCCAGTCCGACACCTTCAGCACAAGAGCCTGTCGCAGAGGCTGAGCACCCAGACATACAGACCGCGCCCTCGGAGACGGTGGCCGAGGTGGTCCAGGTGAAGGCGGAGCCCTCTGAGCCCATGGCAGTAAGCGGCGCTGGTAACGGCACACCAGCAAAGGACCTGCTTGTTACGAAGCCCGAGAACCCGACGAGTCCTTTGTTAAAACGGGAGCCTACAGATACCAACCAGTTCCCAGCAACCAGAGCAGCAGTCAAAGAAGAGACAAAACAGCGGAGGGTCACAGCTGAGACAGAGGAGCCTGAGGCCAAACGATCCCGTTCTGCCTCACCCTTTCTCACCAACTTCAAGATGCCCCCCTTCGACCCAGAAAGCCCCATTGGTTTGGAGTTTGTGGTCCCAAAGACCGGCTTCTTTTGCAAGCTTTGCTCTTTGTTCTATGGCAGCGAGGAGGCGGCCAAGAAAACCCACTGCAGCAGCCTGAAGCACTACCAGAACATGGAGAAATTTGTGCTGAAGCAGAAAGCACAGCAAGCTGCTGATTCAACGGAAGGATCAAGTAAAGGAGCCGCTTCCGTCTAAAAGCCACATCTTTGTTTTCCAATGTTGGTTCATGGGTCCAATCACAATTTActgctgtatatttttttgtttaatttcgaAACtgttaagattttatttaagaCTAATGGGGGTGAAAATCAATTGTGTACAATAAACTATGGTTTAATTGTTAAAGCATGatttaggtttttctttttttttgcacatacaaaacacatctgCCTTTTATTTTCCCTTGGGATGGATTTATAGCCAAGCTGTAGAGCGCACACAAGGGGTCTCCTGTATATCTGTAGCCTTCCATGCAGCCTTGAAACTAACATTACCAGTGGAATCTCAGTATTTCAACTTTGGATTCTGTTTGTTTCAATGCAGATCTTGTACCTTTGTTCCCCCCTGAACCAATCTATCCTGTTACACACAGACTTGCATCTCGATTCTGTTGGATTTGATTCTTAAATATTACTTATCTGCAGTGATTTTACCTGCAGTGTGATTTTCACATTAGCCAGGTTGTTTATGAAtccaaatgaaaattaaatccaTCTGAGGAGGACCATTTTGTATGCTGTGAACACTGCAATTGTAGTATAATAATTTACACAAATAGaccaataatacatttattaaacctttatttGCTATTGAGAATGTATTCAAGTGTGTGATATGTCTGAAGGTCTAATAGCAGGTGATTGCTTTTAGAGGGGAGAGAAGTGAGAACTGCATCAAACCACGAAGCAACACTAATCATTCATTAAAACCCTGCATTAATCTAAggatatataaaaatgaaaaacatacaattgtACAAAGGACTGAACTATGACATGTCACTTATTTGTGTTACAAAGAAGAACACATGATGTTCCaatatttatagatttgttttaatcatttaatctgaaattgcTCCTTCAATTTGTGCTGAAATCTGTTCTCTCACTGCAGGCTTTTATTAACTGGAACAGAAACCACCACATAACTGGTGTAATCATTACCTTTTCTGTACCTTGTTGTAattgatataaaatatgaattcacGTTGCATTATATGTTGGTTTGGgttaatttattctgtattcagtAAACTGATGGCGCAGCAAGCAAAACCTTGGAACACCCGGGAAAAGTCAATAACGGATTCCACCTAGAC

Function

GO: NA

KEGG:

id description
K24692 ZNF638; zinc finger protein 638

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125610 lncRNA upstream 231234 21814371 ~ 21814715 (+) True G100568
TU125542 lncRNA upstream 735344 21306606 ~ 21310605 (+) True G100507
TU125537 lncRNA upstream 980564 21064050 ~ 21065385 (+) True G100502
TU125516 lncRNA upstream 1217335 20828328 ~ 20828614 (+) True G100483
TU125492 lncRNA upstream 1265482 20779346 ~ 20780467 (+) True G100461
TU125695 lncRNA downstream 223264 22288623 ~ 22288848 (+) True G100639
TU125697 lncRNA downstream 381015 22446374 ~ 22449216 (+) True G100641
TU125775 lncRNA downstream 755142 22820501 ~ 22820703 (+) True G100707
TU125778 lncRNA downstream 769895 22835254 ~ 22923396 (+) True G100709
TU125866 lncRNA downstream 1150692 23216051 ~ 23218316 (+) True G100776
AMCG00015782 mRNA upstream 816294 21227280 ~ 21229655 (+) True AMCG00015782
AMCG00015781 mRNA upstream 821370 21157154 ~ 21224579 (+) True AMCG00015781
AMCG00015779 mRNA upstream 992807 21046770 ~ 21053142 (+) True AMCG00015779
AMCG00015774 mRNA upstream 1242095 20802997 ~ 20803854 (+) True AMCG00015774
AMCG00015775 mRNA upstream 1243016 20802697 ~ 20802933 (+) True AMCG00015775
AMCG00015787 mRNA downstream 37759 22103118 ~ 22146071 (+) True AMCG00015787
AMCG00015788 mRNA downstream 100872 22166231 ~ 22178257 (+) True AMCG00015788
AMCG00015795 mRNA downstream 595702 22661061 ~ 22664968 (+) True AMCG00015795
AMCG00015796 mRNA downstream 613478 22678837 ~ 22683895 (+) True AMCG00015796
AMCG00015797 mRNA downstream 641829 22707188 ~ 22715143 (+) True AMCG00015797
TU125356 other upstream 1777664 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 3273983 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 3720045 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 4914200 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 5914562 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 614851 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 2799730 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 4198556 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 4307794 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 5825193 27890552 ~ 27992014 (+) False G101400

Expression Profile