RNA id: AMCG00015787


Basic Information

Item Value
RNA id AMCG00015787
length 3808
RNA type mRNA
GC content 0.55
exon number 34
gene id AMCG00015787
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22103118 ~ 22146071 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCCTGGGGGAGGCACGGGTGGCCATGAGAGATGTTCTCAACTCATCCAACTTGTCTGCCAGCTTTAATGTATCCCTGCTagacaacaagaaaaacaacacagggGCCACATTGGTTATTCAGGTTTCCTACAATCCTCCCCCAGGAGCGGCTCCAGTTTTCCCCCCACCAACTCCCCCAGAGGCCCAGCATGCCCCGTTAGAGTTAGACACTGTTACTgacACAGCAGGCGAGGAGGACACCGAGGAGCAGGTGGAGAGTGCCGAGGAGCCTGAGCCTGCTGTCGGGACCCCTGGGCAGGATGCCCCAACTGTACCCCCCAAGAAAGCTCCCCCAAATGTCGTCCAGGGGCTCAAAAGAAAGAAACGTGTTGCCAAGCAACCTCTGTCTAACAAACCTCAGGATTTACAGATACGTGTCCGGATCATAGAGGCAAGGCAGTTGCCAGGTATCAACATCAAACCTGTTGTCAAAGTTACAGTTGCTGGACAGACTAAAAGGACGCGAATTAGAAAAGGCAACAACCCTTTCTTTGATGAGaccTTCTTCTTTAACTTCTTTGAGTCACCTTCTGAGCTTTTCGATGAGCCGGCTTTTATTACTGTTTTTGATTCCCGATCTCTTCGGACAGACTCTGTCATCGGGGAATTCAGGTGGCTCTTGCTCTCTGACCCTGAAGACATCTCAGCTGGGGCTAAGGGTTACCTAAAAGTCAGCCTTTTTGTGCTGGGGGTTGGCGATGAGGCACCACTGGACAAGAAGGAAGGTGTCGAGGACAAAGAGGACATTGAGGGGAATCTGCTGAGGCCAGCAGGGCTAACGCTGAGAGGGGCGCACTTCACACTGAGAGTGTACAGAGCGGAGGACCTGCCTCAGATGGATGATGCGTTCCTTGATGGGATGAAGCAGATCTTTGGCTTTGACAGCAACCGGAAGAACCTGGTGGACCCACTGGTGGAAGTCCACTTCGCTGGCAAGACGATCTGCAGTAAGATCCTGGAGAAAAATGCCAACCCACAGTGGAACCAGAGCCTCACTCTCCCAATCCGGTTCCCCTCCATGTGTGAGAAGATGAGAATCCGAGTCTTGGATTGGGACCGAGCGAGCCACAATGATATGATTGGCACGATGCACCTTTGCATGTCCAAGATCTCTGCGCCAGGCGGGGAAGTTGAAGTGGATGACAGCCTGGGGTTCCTCCCCACCTTCGGTCCCTGCTATGTCAACCTGTACGGCAGTCCCCGCGAGTTCACCACATTCTCTGACCCCTACGAGGATCTCAACTTCGGCAAGCTGGTGGAGCATGTGGAGCACAAGGTGGAGGACATTCCCCCTGATGACCTGCTGGTGGTGGAGAAGTTCATGCGGAAGCGGAAGTACTGCCTGTGTGCTGCGTTCTACTCGGCCACCTTGCTGCAGGACGTGGACGACGCCATCCAGTTCGAGGTCAGCATCGGGAACTATGGCAACAAGTTCGACAACACCTGCCTGCCGCTGGCCTCCACTACCCAATACAGCCGAGCCGTCTTCGATGGGTGTCATTATTATTTCCTGCCCTGGGGGAATGTGAAGCCTGTGGTGGTGCTCTCCTCAGAGTGGGAGGACATCATGCCCCGGATCGACGCCCTTAACATAATGCTGCACATAGTGGAACGCCTGAAACACAATCTGGAGCAGGTTCAACTGGACCTGAAGTCTGGCACCTCAATCGAAGCAGTGGACGTCAAGGTGGCTAGCCTCTTGGAAGATCTTGCCAGTGACTGCAGCCAGACTCTTCCTGACTTGCAGAGCTGGCCTTGTGCAACCCCCCTGGACAAGGCCAAATACCACCTGCGCCAGACCAACCTCAGCCAGATCAAGCAGGCTGCCCTCAGTCTCAGAGACGGCACCTCCACTGAGCTGAGCGCTGTGCTGGAGCAGGCTGAGGACTGGTTGCTGAGACTGCGATCCTTGGCTGAGGAGCCTCAGAACAGCCTCCCAGACATCGTGATCTGGATGTtacagggagacaggagacTCGCATACTACCGCATCCCTGCACACGAAtatCCACAGAACGCCCAATCTAACTTCAAGCTCCCAGCGCAGCTACGCCTGCGAGTGTGGTTCGGCCTCTCTACTGATTCGAAGGAGTTCAACAAGTTCGCAGAGGGGAAGCTGTCTtatgAGAACCAAACAAAGCTGGCACTGGTGGGTAATTGGGGCACCACTGGCCTGACCTACCCTAAGTTCACCGATGTTACAGGCAAAATCAAACTGCCAAAAGAAAGCTTCCGTGCCTCTCCTGGATGGGCCTGGTCAGGCGACTGGTTCATTAGCCCAGAGAAGACGTTGCTGTATGATGTAGATGCAGGTCACATGACTTACATGGAAGAGGTTTTTGAGAATCACATGCGGTTGCCAGGGGGGCAGTGGATTGGGATGCCAGAGGGCTATACTGATGTGAATGGGGAGAAAGCAACAGCAAAGGACGAGATCGAGTGTCCGCCAGGCTGGGTGTGGGAAGATGTGGAATGGAGCTGGGAGTATGGCATCACCATCCCCCCAGATCGCAAGCCGAAGTCCTGGGTTCCGGCCGAAAAGATGTACCACACCAACCGGAGGCGCCGCTGGATTCGATTGCGGCGCAGAGACTTGAACAAGATGGAAGCACTGAGAAAGCAGAGGCCGGATGACTCGGAGCGAGAGGGCTGGGAATACGCCTCCCTCTTTGGCTGGAAGTTTCACCTGAAGCAGCGCAAGACTGACGCTTTCCGTCGCCGTCGCTGGCGCTGCCGAATGGAGCCCTTGGAGAAGACGGGGCCGGCCGCTGTCTTTGCCCTGGAGGGCTCCCTGgGAGGTGTGATGGAGGAAAAGAATGGTGACAAATCAGTGACTGCCAGCTTTGGGGTGAACAGACCCACCATCTCCTGCATGTTTGATAGTGGCACTCGATACCATTTGCGGTGTTACCTGTACCAGGCCAGGGAGCTCATAGCTATGGACAAGGACAGCTTTTCAGATCCATACGCCATTGTCTCCTTCCTCCATCAGAGCCAGAAGACTGTGACAATCCGTAACACACTGAACCCCGTTTGGGATCAGACACTCATCTTCCATGAGATTGAGATCTTCGGGGACCCCCAGGTGACGGAGCAGAACCCCCCTAGCATCGTGGTAGAGATCTTCGACCAGGACACCTATGGGGCAGATGAGTTCATGGGACGCTGTGTGTGCCAGCCCAAAATGCAGACCTCTCCACGTCTGGCTTGGTTCCCAATACAGCGGATGGGCAAGAGCGTCGGAGATCTTCTGGCAGCATTTCAGCTCATCCGCCTAGAGAAGCCAGCGGTCCATCACATCCCCGGCCTGGAGCTGATTCTTCCGGGCTTCTTCTATGAGAATCTGCAGCAATGGACTACAGACACAGACCTGCCCTACCCACCCCCACAGAGGGAGCCCAACATCTATATGATCCTGGCCTGGGGAGTGAGGAATCTGAAGAGTTTCCAGCTGGCCAGTGTGACCTGCCCCAGTCTGCAGGTGGAGTGCGGGGGGGAGATGATCCAGAGCTGTGTCATCCGCAATGCCAAGAAGAAGCCCAACTTCGACATCAATGTGCTCTTCATGGAGGTGCGTCTACCCAGGGAGGAGCTGTACATGCCACCCATCGTTTTGAAAGTGATTGACAACCGGCAGTTTGGCAGGAAGCCCGTGGTGGGACAGTGCACTATCCGCAACCTGGAGGAATTCCGCTGCATGCCAGTCAGTCTGGATAGGGACACCGCTGAAGACCTATCAGGTAGGAAGagttgtaatgtaatgctt

Function

GO:

id name namespace
GO:0001778 plasma membrane repair biological_process
GO:0048644 muscle organ morphogenesis biological_process
GO:0033292 T-tubule organization biological_process
GO:0030315 T-tubule cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K18261 DYSF; dysferlin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125610 lncRNA upstream 288403 21814371 ~ 21814715 (+) True G100568
TU125542 lncRNA upstream 792513 21306606 ~ 21310605 (+) True G100507
TU125537 lncRNA upstream 1037733 21064050 ~ 21065385 (+) True G100502
TU125516 lncRNA upstream 1274504 20828328 ~ 20828614 (+) True G100483
TU125492 lncRNA upstream 1322651 20779346 ~ 20780467 (+) True G100461
TU125695 lncRNA downstream 142552 22288623 ~ 22288848 (+) True G100639
TU125697 lncRNA downstream 300303 22446374 ~ 22449216 (+) True G100641
TU125775 lncRNA downstream 674430 22820501 ~ 22820703 (+) True G100707
TU125778 lncRNA downstream 689183 22835254 ~ 22923396 (+) True G100709
TU125866 lncRNA downstream 1069980 23216051 ~ 23218316 (+) True G100776
AMCG00015786 mRNA upstream 37759 22045949 ~ 22065359 (+) True AMCG00015786
AMCG00015782 mRNA upstream 873463 21227280 ~ 21229655 (+) True AMCG00015782
AMCG00015781 mRNA upstream 878539 21157154 ~ 21224579 (+) True AMCG00015781
AMCG00015779 mRNA upstream 1049976 21046770 ~ 21053142 (+) True AMCG00015779
AMCG00015774 mRNA upstream 1299264 20802997 ~ 20803854 (+) True AMCG00015774
AMCG00015788 mRNA downstream 20160 22166231 ~ 22178257 (+) True AMCG00015788
AMCG00015795 mRNA downstream 514990 22661061 ~ 22664968 (+) True AMCG00015795
AMCG00015796 mRNA downstream 532766 22678837 ~ 22683895 (+) True AMCG00015796
AMCG00015797 mRNA downstream 561117 22707188 ~ 22715143 (+) True AMCG00015797
AMCG00015794 mRNA downstream 612064 22758135 ~ 22767486 (+) True AMCG00015794
TU125356 other upstream 1834833 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 3331152 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 3777214 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 4971369 17098459 ~ 17131749 (+) False AMCG00015703
TU124453 other upstream 5971731 16131044 ~ 16131387 (+) True G99624
TU125724 other downstream 534139 22680210 ~ 22680773 (+) False AMCG00015796
TU126202 other downstream 2719018 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 4117844 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 4227082 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 5744481 27890552 ~ 27992014 (+) False G101400

Expression Profile