RNA id: AMCG00015807


Basic Information

Item Value
RNA id AMCG00015807
length 1893
RNA type mRNA
GC content 0.60
exon number 12
gene id AMCG00015807
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22894764 ~ 22907142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTATGGCAGGCCCTGGTCTATGGAGCAGAGGAAGGTACTGTTTCAGTGgatGAAGCGCTGGGGTCTGAACACATACCTGTATGGCCCCAAAGACGACCTGAAACACCGGCTGCTGTGGAGGGAGGTCTACTCCCCTGAGGAAGCAGctcagcTGCAGACTCTGGTGGAGGAGGCCGTGTCTCTGGGTCTGCAGTTCGTGTACGCGCTGTCCCCAGGGCAGGACATTGTGTTCTCCAGCTCCTGTGACATCGGGCTACTGAAGCGTAAACTGAGGCAGgTGGCAAATTTCGGGTGCAAGGCCTTTGCCATTCTCTTCGATGACATCGACCACTCTCTGAGCCAGGCTGACAAAGAGGCCTTCTCCTCATTCGCTCACGCCCAGGTCTCGGTGGCCAATGAGATCTTCCACTTCCTGGGGGAGCCGCCCAACTTCCTTTTCTGTCCCACAGAGTACTGCACCTCCCTGTGCTCCCCCAGCCTGGCCAAGTCTCCATACCTTAACACGGTGGGCGAGGAGCTGCTGCCCGGGATCACGGTCATCTGGACTGGCAGTAAGGTTATCTCGCGGGAACTCAGCGTGCCCTCACTGGTGGAGGTGCAGTCGGTGCTCCAGCGCCCCCCGCTGGTCTGGGACAACCTGCACGCCAACGACTATGATTCCCGCCGTGTCTTCCTGGGGCCCTTTAAGGGGCGCCCACCGGGCTTGAAGGCCCACCTACGCGGCCTGCTGCTCAACCCCAACTGCGAGTTTGAGGCCAACTACATCCCCCTGCATACACTTGGCACCTGGCACCGTATGGGCGCAGagggggtgggggaccCCGAGGCGCAGGAGGTGTACTGCCCAGAAAAGGCGCTGTCTCTCGCCCTGCATGACTGGATGGAGGAGATGATTCAGCCACTGCAGCCAGGTCGTCTAAAATTGTCAGGCTCTGAGAATGCAGCCGCAGATCCCTTCACTAGGGGGAGTAATCAGAAGCCATCCCAGGACACTCCAGAAAAGGCCGCCTCCTCTACGGATGCCCCGGACGGCCCTGCCGTGGCTTTGGAGGGGGAGGGTGGGCTGCAAGACCCCGATGTGGATCCACGCAGCGAAGACCGGGGCCTCAGAGCGGACAACACACCCTccagagacggagagagagagagagagggagaggggcagagagatgTGGAGAAGGAGCGCCAGGAGAAACCTACAGGGAACGGGCCACCTCAGGCACCCATGGGGCCCCAGGAGAAGGGGAGGAAGGGCGCCCTAGGAAGAGGGCGGACCCCACTAAGCGAGGAAGAGGTGCGGCTGCTGGTGGGGCTGTACTTCCTGCCCCACGAGCACGGCCCTCCCGCCCAGCGCCTCCTGCAGGACCTGGCTTGGCTCAAGGCCCACAGCCACTGCGTCAGCGCCAATGGAAAGAAGGCTGAACCCTACAAGGCGGAGGAGTGGCGCGTGCGGGCCAGCCGCTTCCAGCAGGACTGCGACAGCATCGCAAGGCTCCACGGCAGCGTGGTCAACTGCACCAACCGCGCCGTCCTCTATGATCTCTACCCCTATGTGTGGGACCTGAGAAATACTGTGCTGGTTGCCAAGGCCTTCATCAGTTGGTTGGaTGGACGAGTGCTGAATGACAGCTATCCTTTTGGCTCCTGGAGGAACTGCTTTCACTGGTGCCGTACCAACACCTCCGTGGACCTGCTGGGTGTGGAGTCGGAGCCCTGGGTGTTTAAAGGAGGGCTGTCTGGGGAGTTCCAGATGCTGCTGCCCATAGGAACCAACAATGAACTATTCAgccacccccctcctctctttccCAGTTCCCGACTCTATAATATTCGCCCATACCTGACCAAAGACAAGGTGAGCAGCACAACggatgaaaaaaaaacctgctga

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process

KEGG:

id description
ko00680 Methane metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125775 lncRNA upstream 74061 22820501 ~ 22820703 (+) True G100707
TU125697 lncRNA upstream 445548 22446374 ~ 22449216 (+) True G100641
TU125695 lncRNA upstream 605916 22288623 ~ 22288848 (+) True G100639
TU125610 lncRNA upstream 1080049 21814371 ~ 21814715 (+) True G100568
TU125542 lncRNA upstream 1584159 21306606 ~ 21310605 (+) True G100507
TU125866 lncRNA downstream 308909 23216051 ~ 23218316 (+) True G100776
TU125896 lncRNA downstream 376549 23283691 ~ 23284077 (+) True G100801
TU125958 lncRNA downstream 855149 23762291 ~ 23762523 (+) True G100858
TU125964 lncRNA downstream 932656 23839798 ~ 23961637 (+) True G100863
TU126009 lncRNA downstream 1163684 24070826 ~ 24156851 (+) True G100903
AMCG00015801 mRNA upstream 19961 22850804 ~ 22874803 (+) True AMCG00015801
AMCG00015794 mRNA upstream 127278 22758135 ~ 22767486 (+) True AMCG00015794
AMCG00015797 mRNA upstream 179621 22707188 ~ 22715143 (+) True AMCG00015797
AMCG00015796 mRNA upstream 210869 22678837 ~ 22683895 (+) True AMCG00015796
AMCG00015795 mRNA upstream 229796 22661061 ~ 22664968 (+) True AMCG00015795
AMCG00015806 mRNA downstream 12038 22919180 ~ 22920439 (+) True AMCG00015806
AMCG00015811 mRNA downstream 41520 22948662 ~ 22958584 (+) True AMCG00015811
AMCG00015810 mRNA downstream 69778 22976920 ~ 22979992 (+) True AMCG00015810
AMCG00015813 mRNA downstream 203130 23110272 ~ 23116783 (+) True AMCG00015813
AMCG00015817 mRNA downstream 228436 23135578 ~ 23145714 (+) True AMCG00015817
TU125724 other upstream 213991 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 2626479 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 4122798 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 4568860 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 5763015 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 1957947 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 3356773 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 3466011 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 4983410 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 5670358 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile