RNA id: AMCG00015815


Basic Information

Item Value
RNA id AMCG00015815
length 480
RNA type mRNA
GC content 0.69
exon number 2
gene id AMCG00015815
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23175632 ~ 23180916 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGATCAAGCCACGGGCATGGGCGATGGGGTCGCCGAGGAGCGAACCCGCCTCTCTGGATCCACCGCGATGTGCCCCGACCGAGCCAGGGACGAGAAGGGCCGCCCCGAGGTGGAGAGCCGCTCGCCGGGGCAGGGAGGCACAGACACCCCGGGGACCTCCGCCTCCACGCCGACCTCCTCCAGCGAGGACGGGCACGACAAACTTTCCGCCGTGGACCCCGACTACTGCAGGCGGATCCTGGTGAGGGACGCCAAGGGCACCATCCGCGAGATCGTGCTGCCCCGCGGGCTGGACCTGGACCGGCCCAAGCGCACGCGCACGTCGTTCACGGCCGAGCAGCTGTACCGGCTCGAGCTCGAGTTCCAGCGCGGGCAGTACGTGGTGGGGCGCGAGCGCACGGAGCTGGCGCGGCAGCTGCACCTGTCCGAGACGCAGGTAGGAGGGGGGGGGTGCATGTTTATATGTGAACCATAA

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0090259 regulation of retinal ganglion cell axon guidance biological_process
GO:0021554 optic nerve development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030900 forebrain development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125778 lncRNA upstream 252236 22835254 ~ 22923396 (+) True G100709
TU125775 lncRNA upstream 354929 22820501 ~ 22820703 (+) True G100707
TU125697 lncRNA upstream 726416 22446374 ~ 22449216 (+) True G100641
TU125695 lncRNA upstream 886784 22288623 ~ 22288848 (+) True G100639
TU125610 lncRNA upstream 1360917 21814371 ~ 21814715 (+) True G100568
TU125866 lncRNA downstream 35135 23216051 ~ 23218316 (+) True G100776
TU125896 lncRNA downstream 102775 23283691 ~ 23284077 (+) True G100801
TU125958 lncRNA downstream 581375 23762291 ~ 23762523 (+) True G100858
TU125964 lncRNA downstream 658882 23839798 ~ 23961637 (+) True G100863
TU126009 lncRNA downstream 889910 24070826 ~ 24156851 (+) True G100903
AMCG00015818 mRNA upstream 18370 23151053 ~ 23157262 (+) True AMCG00015818
AMCG00015817 mRNA upstream 29918 23135578 ~ 23145714 (+) True AMCG00015817
AMCG00015813 mRNA upstream 58849 23110272 ~ 23116783 (+) True AMCG00015813
AMCG00015810 mRNA upstream 195640 22976920 ~ 22979992 (+) True AMCG00015810
AMCG00015811 mRNA upstream 217048 22948662 ~ 22958584 (+) True AMCG00015811
AMCG00015819 mRNA downstream 31764 23212680 ~ 23229248 (+) True AMCG00015819
AMCG00015816 mRNA downstream 75174 23256090 ~ 23273675 (+) True AMCG00015816
AMCG00015814 mRNA downstream 95040 23275956 ~ 23281282 (+) True AMCG00015814
AMCG00015820 mRNA downstream 142243 23323159 ~ 23337368 (+) True AMCG00015820
AMCG00015827 mRNA downstream 162762 23343678 ~ 23367384 (+) True AMCG00015827
TU125724 other upstream 494859 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 2907347 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 4403666 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 4849728 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 6043883 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 1684173 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 3082999 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 3192237 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 4709636 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 5396584 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile