RNA id: AMCG00015820


Basic Information

Item Value
RNA id AMCG00015820
length 2736
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00015820
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23323159 ~ 23337368 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTCGCCTGGAAGACATTGCAAACGTCGCCCTGCGGGTTCCCAGTATCCTGATGCTGGATTTGTTGTACAAGTGTGACATCGACAGCTTCACAGAGCAACTCCGAGCTAAAAATGAAGACATgctctttaaatacaaatatgtcatCTGGAATATGTATTACGTCGGTCACTTAGTAAGTGTTGTTGTGCTCATCTTGCCCCTGAGACACATCGTCAAGCTGTATCTCTACATCCTCTCCGCCTTGCTTCTCTATGTTGGACACCAGATCTCCAGGGACTATGTGCGTGGGGAGATTCAATATGGGTACGAAGGAGCTGTCTATCTGGATTCTTTGGCCTTCAATCGGTTTGTCACCGCACTCACAAGTCAGATTATCCTCAGCACGCTGTGTGCCTTCCTCATGAAGACCAGGCAAGTGTGGCTCTTCTCTGCCCACCTGCTCCCCTTGGTGGCCCGCCTGTGCGCTGTACACCACTCCACCCTGGTCACCGTCAACTCCTTCGCCATGGTCCTCACTGGCATCGAGGTGGCCGTCTTCCTGCTCTCCAACCTCTTCGTGCCCTACAAGTTGGCCCGTTCTGCCTACAGGGAGGTGCTGCAGCTGGAGGTGATCGAGCTGTACAGACTGCTGGCTGTGGGCATCTCTCTGTGGAATCAGTTTGCCGTCCCAGCTCTGTTCAGTGTATTCTGGTTCGTGCTGTTCCTGGTGCAGATCTACTCCTATGCCACGGCCAGCAATAACTTCATTGTCTCTGAGTGCTGTGCCACCCCGTACTCCCTGCTGGGCCTGACCTTTGTGGTTTCTTACCTGGCCCTGGGGCTTCTGAACCTCTGCAAGTTCTACCTGGCCGGATACACTGCCATCCAGAACGAGAACGTCATGCACAGGGGAGTGACGGAAGGAGTGACCCTGCTCCTGCTGGCTCTGCAGACTGGCCTCCTGGACATGCAGGTCCTGCAGCGCACCTTCCTCCTCAGCATCATCCTCTTCATCGTGGTCACCTCCACCCTGCAGTCCATGATTGAAATCACAGACCCCATCATCCTGGCCCTTGGCGCTTCCCGCAACAGGAGCCTGTGGAAGCACTTCCGGGGCCTCAGCATGTGCCTCTTCCTGCTGGTGTTCCCAGGATTCATGGCCTACAAGATCTCTCAGTTCTTCCACATGGATTTCTGGCTCCTGATCCTGGTAATGGCGTGTTGTTCGGTCGTGACCAGCAGCAGCCCCTTGAGCTTTTTCTGGGGAATGATGACGGATTATTCTGTGGGGTTTGTTGGACTCGCGGGGGTGGAGTTTGGGGTTTTCAGTGGTCTGTTGCTTGGCTTGACGGTGCCCTTGCTGTCCGTCGCTGCCCAGGTGATCGGGACGCTCCTCATCTACTCGCTGTTCATGGTGGAGCTGGTACGCCGCGACCCCATCGAGAGCCTGGACGAGATCATCTACTATGTGAACGCCGTGAGCCGCGTGCTGGAGTTCCTGGTGGCGCTGTGTGTGGTGGGCTACGGCACCTGGGAGTCGCTGTTCGGGGAGTGGAGTTGGATGGGCGCCTCGGTCATCATCATCCACTCCTACTTCAACGTGTGGCTCCGGGCCCAGTCTGGCTGGAGGAGCTTCCTGCTCAGACAGGAGGCGGCCAAGAAGATCAACTCACTGCCCCGGGCTACCGCCGAGCAGCTGCGGCAGCACAATGACGTGTGCGCCATTTGCTTCCAGGTCAGTCCGGACTCGCCAATCAGCTGCAGTGGGCTGGAGATGAGTTCCGCAGTAGTGACATATTGCGGGCATTTCTTCCATGCCAATTGTCTGAGGAAGTGGCTGTACGTCCAGGAGACTTGTCCCATGTGCCACCAGCCGGTGAAGCCCAGCGCCTCCTCCCAGAACCAGGGCAATGGAGAGGACCAGGCCCCTGCAGGGGACAGAGCGGAGGAGGGTGGAGAGGCCGGGCGGGGAGCTCCTCAGATGGGCAACCTGCAAAATCGAGTGCCAGGCTTCAGGAGTGCGCAGGAGGCTGACGCTGCAGGGGTTCCAGGCGGCTCTGCCCATCGAGAGGGGGAGGAGCTTTATGGTGGCACAATGGCAGGTGACTTGAATGCCTCAAATGACGGTCTGGATGGAGCGGCCGTCCAAGGCCTGCGTTTTAGTGCCAGCGGAGACTTTGTGGGCTTCGCCAGCCCGGTGGTCCACAACGTTCAGGCCGAGCTTTCTCCTCTGACGGAGACCCGTGTGGTGAAACCGGTTCTGAGTGGACGGGATGGAGAGCGTGTTGAAAATGGCCCTGGAGCCAATGAAATTGAAGTCCAGGGATTATCGTCTGGCTCTTGTAGGGGTCCGGTGGAGGTACGCGGTGGTCAGAATGTCACAGGAGAACTAAGCCTTGAATACAGAAGACATTTATCGACGGCGGGCAGGCCCGTGCCAGGCGAGGGAGGTGAAGTAGTGGACAATGACAGACAGATAAGTAAAGGGGAGAAGACTGGAAAAGATGAAACTAAGATTTGCAGCAATAATGAAGGACGCGACCTCGGCTTTCTGCCAGAGGCTTCCAGTTTACTGGACAGATCTGAGAAGTTTCTAAGAACTCTGAATGATGGGGATTCACTGGCAGCTGGAGAAACGGACATGGCGTGTTTCGGTCAGAACTGCGAAGGCCGCCTCTCTCAGCCGTGTCAGGAGTTGAACAGCGTCGCAGGAGAGGTCCAGGAGAAGAGCGCTTCGatatgCATTAACTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125896 lncRNA upstream 39082 23283691 ~ 23284077 (+) True G100801
TU125866 lncRNA upstream 104843 23216051 ~ 23218316 (+) True G100776
TU125778 lncRNA upstream 399763 22835254 ~ 22923396 (+) True G100709
TU125775 lncRNA upstream 502456 22820501 ~ 22820703 (+) True G100707
TU125697 lncRNA upstream 873943 22446374 ~ 22449216 (+) True G100641
TU125958 lncRNA downstream 424923 23762291 ~ 23762523 (+) True G100858
TU125964 lncRNA downstream 502430 23839798 ~ 23961637 (+) True G100863
TU126009 lncRNA downstream 733458 24070826 ~ 24156851 (+) True G100903
TU126087 lncRNA downstream 1147461 24484829 ~ 24549300 (+) True G100956
TU126093 lncRNA downstream 1191392 24528760 ~ 24537309 (+) True G100962
AMCG00015814 mRNA upstream 41877 23275956 ~ 23281282 (+) True AMCG00015814
AMCG00015816 mRNA upstream 49484 23256090 ~ 23273675 (+) True AMCG00015816
AMCG00015819 mRNA upstream 93911 23212680 ~ 23229248 (+) True AMCG00015819
AMCG00015815 mRNA upstream 142243 23175632 ~ 23180916 (+) True AMCG00015815
AMCG00015818 mRNA upstream 165897 23151053 ~ 23157262 (+) True AMCG00015818
AMCG00015827 mRNA downstream 6310 23343678 ~ 23367384 (+) True AMCG00015827
AMCG00015826 mRNA downstream 30828 23368196 ~ 23392479 (+) True AMCG00015826
AMCG00015823 mRNA downstream 75810 23413178 ~ 23453896 (+) True AMCG00015823
AMCG00015824 mRNA downstream 122959 23460327 ~ 23471703 (+) True AMCG00015824
AMCG00015822 mRNA downstream 376241 23713609 ~ 23733680 (+) True AMCG00015822
TU125724 other upstream 642386 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 3054874 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 4551193 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 4997255 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 6191410 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 1527721 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 2926547 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 3035785 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 4553184 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 5240132 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile