RNA id: AMCG00015827



Basic Information


Item Value
RNA id AMCG00015827
length 399
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00015827
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23343678 ~ 23367384 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAAGAGGAGCCCCTCACCAGCGGGATGACACCGGTGCGCTCCTGGATGCAAAGCGCCGGGATCCTGGACGCAAACACGGCAGCGCAAAGCGGCGTGGGTCTGGCACGGGCCCACTACGAGAAGCAGCCGCCCTCCAACCTGAGGAAATCCAACTTCTTCCACTTCGTCTTGGCGCTGTACGACCGGCAGGGTCAGCCCGTGGAGATCGAGCGGACCTCCTATGTGGACTTTGTGGAGAAAGACAAAGAGTACAATGGAGAGAAGACCAATAATGGGATTCACTACAGGCTACAGCTTCTGTACAGCAATGgCATCAGGACAGAACAGGACTTGTACGTACGGTTAATAGACTCGATGACCAAACAGGATCTTACAATCCACGCTCTGGCAAACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU125896 lncRNA upstream 59601 23283691 ~ 23284077 (+) True G100801
TU125866 lncRNA upstream 125362 23216051 ~ 23218316 (+) True G100776
TU125778 lncRNA upstream 420282 22835254 ~ 22923396 (+) True G100709
TU125775 lncRNA upstream 522975 22820501 ~ 22820703 (+) True G100707
TU125697 lncRNA upstream 894462 22446374 ~ 22449216 (+) True G100641
TU125958 lncRNA downstream 394907 23762291 ~ 23762523 (+) True G100858
TU125964 lncRNA downstream 472414 23839798 ~ 23961637 (+) True G100863
TU126009 lncRNA downstream 703442 24070826 ~ 24156851 (+) True G100903
TU126087 lncRNA downstream 1117445 24484829 ~ 24549300 (+) True G100956
TU126093 lncRNA downstream 1161376 24528760 ~ 24537309 (+) True G100962
AMCG00015820 mRNA upstream 6310 23323159 ~ 23337368 (+) True AMCG00015820
AMCG00015814 mRNA upstream 62396 23275956 ~ 23281282 (+) True AMCG00015814
AMCG00015816 mRNA upstream 70003 23256090 ~ 23273675 (+) True AMCG00015816
AMCG00015819 mRNA upstream 114430 23212680 ~ 23229248 (+) True AMCG00015819
AMCG00015815 mRNA upstream 162762 23175632 ~ 23180916 (+) True AMCG00015815
AMCG00015826 mRNA downstream 812 23368196 ~ 23392479 (+) True AMCG00015826
AMCG00015823 mRNA downstream 45794 23413178 ~ 23453896 (+) True AMCG00015823
AMCG00015824 mRNA downstream 92943 23460327 ~ 23471703 (+) True AMCG00015824
AMCG00015822 mRNA downstream 346225 23713609 ~ 23733680 (+) True AMCG00015822
AMCG00015829 mRNA downstream 380046 23747430 ~ 23760626 (+) True AMCG00015829
TU125724 other upstream 662905 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 3075393 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 4571712 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 5017774 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 6211929 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 1497705 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 2896531 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 3005769 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 4523168 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 5210116 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile