RNA id: AMCG00015833


Basic Information

Item Value
RNA id AMCG00015833
length 1415
RNA type mRNA
GC content 0.40
exon number 12
gene id AMCG00015833
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24237820 ~ 24265831 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATTGTGTtttgaaggagctggagaaaATTCTTTCGGACACTCCACCTGTTTGGAAGGGAACATCAAAACTTTTTCGGAACTTGCGTGATCGGGgtATCATTGCTTACACAGAATATCTGTTTCTGCTGTGCATTTTAACAAAGCCTCATGCAGGTTTTAAAATAGCATTCAACATGTTTGATGCTGACGGAAATCAGATGGTGGACAAAAAGGAGTTTTTAGTGCTACAAGAAATATTTCGCaagaaaaatgagaaaaagtTACGGAAAGGAGACGCTGAAAAATCTGCACTGCTGAATTTGCAACTTTATGGATATCAGTTTGCTCCTGTCAACAGCGTTCTTAAAAAAGATCCTCAGGATTTTGCCCCTAGAAGCTACTGGGATATTCTGAGACGCAGTACAAGCCAAGCCCTCTTTTCAGACCTTGCAGAGCGTGCTGAAGAGAGCATGATGATAGATACAACACTGTTGGTCCATTTCTttgggaaaaaaggaaaggctGAGCTGAACTTTGATGATTTTTACAGATTCATGGACAATCTGCAGACAGAGGTTCTTGAGATCGAGTTTCTGACATATTCCAAAGGCATGACTACTATAAGTGAGGAAGACTTTGCTCGCATTCTGCTGCGCTACACGAATGGAATCACATTTGATGAGTTTAGATCATTCTTCCAGTTCCTGAACAACTTGGAAGATTTTGCAATTGCAATGCAAATGTACAACTTTGCAAACCGGTCAATCGGGCAagATGAGTTCAAGCGTGCAGTCTATGTGGCAACAGGGTTGAAACTCACACATCACTTAGTGAACACGGTGTTCAAGATCTTCGATGTAGACCGAGATGACCAGCTGAGTTACAAGGAGTTTATTGGCATTATGAAGGACAGGCTGCACAGGGGCTCGCGGGGCTACAAAACTGTAGAGAGGTATACTACCTTCAGAGCCTGTATGAAGAAGGAACTCCAAAGCAGTAGGTGAATACATTGTACGGTGCGTCTGCTTTCGTCACATGTGTGAGAGGCGAAGTCAGCAAACAGCTACGACAGCTCTGGAAGAGATTTCAAGAAAAAGATTAGTCATTTCTAACAGcaacaaaaagcaaagaaatTAAGTGCAGCTTGCAGTGATCACATTTGCCTTTTAATGAAGTCTGAAGGTGACTGCTTATGTAAACTAGTTCCTAGTTCTCGAAATCCTGGGACttgcttgtgttttgttctttgcgTTATAATGTTTTAGACAATTCTCTCCTTGCTGCATACATGagcatttgaatacatttttaactttgtAGTTTCTTTTTAAGTCCTCGCTTTCCAAAAAAAGGACGTTTACCATTACATAGGAtactgtaattttgttttgtgttaaaatgatCCCAAATATTTCTAAAATTTCAAACCAGA

Function

GO: NA

KEGG:

id description
K23843 MICU3; calcium uptake protein 3, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126009 lncRNA upstream 80969 24070826 ~ 24156851 (+) True G100903
TU125964 lncRNA upstream 276183 23839798 ~ 23961637 (+) True G100863
TU125958 lncRNA upstream 475297 23762291 ~ 23762523 (+) True G100858
TU125896 lncRNA upstream 953743 23283691 ~ 23284077 (+) True G100801
TU125866 lncRNA upstream 1019504 23216051 ~ 23218316 (+) True G100776
TU126087 lncRNA downstream 218998 24484829 ~ 24549300 (+) True G100956
TU126093 lncRNA downstream 262929 24528760 ~ 24537309 (+) True G100962
TU126086 lncRNA downstream 277654 24543485 ~ 24549300 (+) False G100956
TU126137 lncRNA downstream 330643 24596474 ~ 24597817 (+) True G100998
TU126169 lncRNA downstream 337471 24603302 ~ 24608554 (+) True G101029
AMCG00015830 mRNA upstream 239811 23989239 ~ 23998009 (+) True AMCG00015830
AMCG00015829 mRNA upstream 477194 23747430 ~ 23760626 (+) True AMCG00015829
AMCG00015822 mRNA upstream 504140 23713609 ~ 23733680 (+) True AMCG00015822
AMCG00015824 mRNA upstream 766117 23460327 ~ 23471703 (+) True AMCG00015824
AMCG00015823 mRNA upstream 783924 23413178 ~ 23453896 (+) True AMCG00015823
AMCG00015834 mRNA downstream 24538 24290369 ~ 24306093 (+) True AMCG00015834
AMCG00015835 mRNA downstream 79793 24345624 ~ 24353418 (+) True AMCG00015835
AMCG00015837 mRNA downstream 149293 24415124 ~ 24439833 (+) True AMCG00015837
AMCG00015836 mRNA downstream 176806 24442637 ~ 24452889 (+) True AMCG00015836
AMCG00015842 mRNA downstream 293294 24559125 ~ 24594041 (+) True AMCG00015842
TU125724 other upstream 1557047 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 3969535 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 5465854 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 5911916 18320056 ~ 18325904 (+) True G100007
TU124723 other upstream 7106071 17098459 ~ 17131749 (+) False AMCG00015703
TU126202 other downstream 599258 24865089 ~ 24865552 (+) True G101061
TU126442 other downstream 1998084 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 2107322 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 3624721 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 4311669 28577500 ~ 28580829 (+) True AMCG00015901

Expression Profile