RNA id: AMCG00015850


Basic Information

Item Value
RNA id AMCG00015850
length 1302
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00015850
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26038348 ~ 26040669 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAGGAGATAGAAAAGTCACAGCAGCGTGAATTAGCCCTGGCTCTTGAACTTGAGCAATCAGACACCAGATGTCGAACTCAAGGAGAGATCGATAAGGATAATTCGATTAGTAAGTCCTGTACGATCCAAAGAGCACAGTCCGATGTTGGTGAAAATCCACTGGAAAGGCAGCAACAAAAGGAAGAGCACAAGTTTGAGAGTTCACTGGAAAAGCATCCTTTAGAAAATGAAACCAAAGATGCTTTTGAAGTGAAGAACTTTGAAATGACTATTGAGAATCTTAAAAACCAGTGTCTGGCCCGAGAGGAGAGAATGATTCACCTGAAACAGGAAAAACTGGAAGCTGAAAGAAAGCTAAGGAAGATGAAGGACTACAGTAACGAATGCGTCAAGAAGCTGCAGAAACTCCTGCATAAATGCAAAGAACTcaaaagccaaaacaaaactCTTGCCGAGCAACAGAAGCAGCAGCTCGAATTCCTCAATGCTGTGAAAGAAGAGAGACAGCAGGCACGGGATGATAAATGCGGCATTTTAAGGGAGAACGACATAATCAAATCTCTGCTGGTCGAGGCGCACCGCAGCTTGGCTCAGAAATCAGACTGGAATCGGCAGCCGGATAGCAAGGTGGCATTCTTGACAGGCGAGGTGAGGCAACTGACAGAGGAGCTGGGCGTCAACAAACTGGAAACACAGAGAATTAGATCTGTGAAGGAGACTTTCCTCCAGGCGTCAGATGAGAAGCTCACGGTGGATTGTGACAATGTCATGAGAAATCTCCAGAAAGAAGTGGACTGCCTGGCCTCTCCAAAACTGTCCACAGAACAGAAGGTCATGGATGAGATCCAAAACGATCCAGCCAAAAACAGCGTGGGAGAAGATTGTGAGATGTTATCTGTGGGGGTGGCCAAGCTGAAGGTGGACAATCGTTTGCTCCAGCAGGAACTCCAACAGTGTGTCCAGAAGAACCTGCAACTCAAGGGCATCGTGCAGAGGCAGAGGGAGGAGCGGAAGGTGTTGGAAGACTGTCTCTTCACTGTAACAAGCGCGAAAGATATCCTGCAGCTGGAAGTTCGAAAGCTGCAACAAGATTACCTTGACCTCAGAAAGAGTATCTCCACTCAGCTTAGAACTAAAAACCTTGACGCATCCAGTGGTTCATTGGGGTTAAATGAAATGCTGGACTTCAAAGATAAGGAAAGGGTGTATAACAGCCCAAAAGAGCAACTGGCAATTGACCTGATCAGGAAGCGACTTGAAGAAGATGAGCTGAAACGAGGCACTACTGAGCATTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126273 lncRNA upstream 312770 25667828 ~ 25725578 (+) True G101116
TU126264 lncRNA upstream 542429 25420890 ~ 25495919 (+) True G101107
TU126239 lncRNA upstream 628699 25408665 ~ 25409649 (+) True G101088
TU126237 lncRNA upstream 629812 25388061 ~ 25408536 (+) True G101087
TU126213 lncRNA upstream 927290 25110798 ~ 25111058 (+) True G101069
TU126469 lncRNA downstream 323626 26364295 ~ 26365059 (+) True G101270
TU126470 lncRNA downstream 326928 26367597 ~ 26367905 (+) True G101271
TU126471 lncRNA downstream 328816 26369485 ~ 26369703 (+) True G101272
TU126472 lncRNA downstream 329423 26370092 ~ 26370326 (+) True G101273
TU126481 lncRNA downstream 434391 26475060 ~ 26475349 (+) True G101282
AMCG00015849 mRNA upstream 7841 26018691 ~ 26030507 (+) True AMCG00015849
AMCG00015847 mRNA upstream 40487 25953359 ~ 25997861 (+) True AMCG00015847
AMCG00015845 mRNA upstream 632759 25373915 ~ 25405589 (+) True AMCG00015845
AMCG00015846 mRNA upstream 701072 25334016 ~ 25337276 (+) True AMCG00015846
AMCG00015842 mRNA upstream 1444307 24559125 ~ 24594041 (+) True AMCG00015842
AMCG00015848 mRNA downstream 5437 26046106 ~ 26055409 (+) True AMCG00015848
AMCG00015853 mRNA downstream 15433 26056102 ~ 26061085 (+) True AMCG00015853
AMCG00015854 mRNA downstream 80139 26120808 ~ 26129334 (+) True AMCG00015854
AMCG00015852 mRNA downstream 97440 26138109 ~ 26150323 (+) True AMCG00015852
AMCG00015851 mRNA downstream 122565 26163234 ~ 26168850 (+) True AMCG00015851
TU126202 other upstream 1172796 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3357575 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 5770063 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 7266382 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 7712444 18320056 ~ 18325904 (+) True G100007
TU126442 other downstream 223246 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 332484 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 1849883 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2536831 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3592769 29633438 ~ 29638781 (+) False AMCG00015918

Expression Profile