RNA id: AMCG00015852


Basic Information

Item Value
RNA id AMCG00015852
length 1551
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00015852
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26138109 ~ 26150323 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGCCATGCCTGCTGCCCCTCACTCGGCCGCGCCAGGCCGCCTCCCGGCCCTCCAGCACCCGCTGTCTAGACTGGGAGACCCCGAGAGCATCTCTCTCCGAGGTTTCTCCACGGACCGCGGCTCAACCCCGAAAGGAAACGCCGAGGAGCGAGGAAGACCGCTGGCCCAGGAGGACAGGCTGGACACCCTCTTCAGAAACCAGACGGCGAGAAGCTCCAGGGCCCCGGACAGCCCGCTTCCCACCCGTCCCATCCCCGGGGGAGTGGAGGCGACTGCCGGGGCGGATCCAGAAAAGCCCCGACTGCCCGTGTTTGGACAGAGGGCAGACTTTGGGAGCCGCGCAGAGAGCAGAGGGAGTCAAAGCAGCAGCCGGGCCAGCACTGTCTCCCGCCCAGGGACACAGCTGAGGATAGAGGTGGACGAGCTCTTCAAGAACAACGATCCTGAGGGAAAAGGCCAGGTCAACAGGCTACAGCTGAGTGAGAAGAGCATCATTAGGTTCGAGGAGCTGTATGCCGCTGTCAGAGAGCCCATCTCCTCCGGAGCCCCGGTTTGGTTCAGCCCAGTTCACCCTCCCAGCGATAGACCGTCGATGACAGCCAGCCAGGTCCACACACAGCTCAGAGGGAAGGCTAAGCAACGGTTCCTGGATGCGTTGGAACATCTTCCTAAGAAGACCCCAGAGGGAGCCAGCAGGATTGTTGCCCCAGAATTCAGGTCTCTGCTAGAGGGCATTGGCTTTCACATGGAAGAAGAGGAGTTTGATAAGCTATGGAAGAGGTACGATACGGACGGACTTGGGGCCATCAAAGCAGACGCTCTTCTGAGGAGAGTTGGCGTTGACCATCTGAAGGACTCTTGTAATTATGGTGAAAATGTAGATCAACAATCCACGGATCAAGTCAACTCACAAGAGTCACATAAACAATCAAGGACCCTTTCAAAAGCTGAGGAGGACCGCCGAGCATCCATAACTATAGAGAGATGGCTGAAGGACAAGTTCAGAGAAGGTTTCCAGAAGATGAGGAGTGAGTTTGAGAAATACGATCCAGAGAAAACAGGCAAGGTTCAACTCGATGCcttcttgtgtgttttggagAAATGTGACTTGCACCTAAAGAAGGAACATGTGACCCTTTTCCTGGCGAGATGTGGTCTGGAAAAATCCAAGCCCGGCATCGACTATGTTGAGTTCCTGAGGAGATACCAGGATCGCAGTGAAGAAGGAATTACACATAAAATCCTGTCCAATCCACAGCACAAATTCAATCAGGATGAAAACATCAGCCTGGCCTCCACTGTTACTGCAATAGAGGCCAAACTGGCCCACATGTTTCAGTCTGATTTCCTCACTCTTCTTGATACCTTTCAtaaaATTGACAAATTTGACAGGAAGATAATTAGTCAGCAGGAGTTTCGAGCTGCAATCGAAAGCAGGTTCAGCGTGGAGATCGACGACGACGAGTTTGAACAGCTGCTGGACCGACTGCCTCTGGATGAAGACGGACAAGTCCGATACCCCCAGTTCATGGCCACTTTTGATTCC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04218 Cellular senescence
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126273 lncRNA upstream 412531 25667828 ~ 25725578 (+) True G101116
TU126264 lncRNA upstream 642190 25420890 ~ 25495919 (+) True G101107
TU126239 lncRNA upstream 728460 25408665 ~ 25409649 (+) True G101088
TU126237 lncRNA upstream 729573 25388061 ~ 25408536 (+) True G101087
TU126213 lncRNA upstream 1027051 25110798 ~ 25111058 (+) True G101069
TU126469 lncRNA downstream 213972 26364295 ~ 26365059 (+) True G101270
TU126470 lncRNA downstream 217274 26367597 ~ 26367905 (+) True G101271
TU126471 lncRNA downstream 219162 26369485 ~ 26369703 (+) True G101272
TU126472 lncRNA downstream 219769 26370092 ~ 26370326 (+) True G101273
TU126481 lncRNA downstream 324737 26475060 ~ 26475349 (+) True G101282
AMCG00015854 mRNA upstream 8775 26120808 ~ 26129334 (+) True AMCG00015854
AMCG00015853 mRNA upstream 77024 26056102 ~ 26061085 (+) True AMCG00015853
AMCG00015848 mRNA upstream 82700 26046106 ~ 26055409 (+) True AMCG00015848
AMCG00015850 mRNA upstream 97440 26038348 ~ 26040669 (+) True AMCG00015850
AMCG00015849 mRNA upstream 107602 26018691 ~ 26030507 (+) True AMCG00015849
AMCG00015851 mRNA downstream 12911 26163234 ~ 26168850 (+) True AMCG00015851
AMCG00015866 mRNA downstream 46341 26196664 ~ 26224181 (+) True AMCG00015866
AMCG00015873 mRNA downstream 77363 26227686 ~ 26234075 (+) True AMCG00015873
AMCG00015869 mRNA downstream 91808 26242131 ~ 26253246 (+) True AMCG00015869
AMCG00015868 mRNA downstream 104590 26254913 ~ 26261489 (+) True AMCG00015868
TU126202 other upstream 1272557 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3457336 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 5869824 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 7366143 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 7812205 18320056 ~ 18325904 (+) True G100007
TU126442 other downstream 113592 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 222830 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 1740229 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2427177 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3483115 29633438 ~ 29638781 (+) False AMCG00015918

Expression Profile