RNA id: AMCG00015854


Basic Information

Item Value
RNA id AMCG00015854
length 1497
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00015854
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26120808 ~ 26129334 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAGCCCCAAAGACTTAGAGGGAGAAGTGGACCACGCTTTCTTTGACAGTGATTTTGAAGACGGCGGCCAGGACAGGGGTGGTGTTAGTGGAAATATTCATGAGGAAAAGCCCTTGGAGGCCCGAGGGAAAAGCAATGGAGGgtcagcacagagcagagagagctccttagaggaggagagggagaagggcaGCAGTTCGCTCAAAGAGGACCTGAGTCGCCCTTCGAGTGCCTCCTCTTCACTTTCTTATGGGGCCAGATCCGAGGTCAGCAGCAGTGGCAAACTGGAAGGTGCTTCTGGCCGCCATTTAATCATCCCCCACAGAATCCCCACTGGCTCCTCCACCGAGGAGAGGGAATACGAGGACGACGATGAGGAGGCGGACGAAGAAGACAGCTATAATCGCAGCGAAGACGAGAGCGAGGCAGAGCGCGAGGAGAAGCACGCCAGATGTCGATCGGCCCACCCTGGCAGCAGTGTGAAAAAAGCCTGTACTAAGTTCAGGACCCACAGCCCTCCTTCCCCCTCGGAGTCGGAGAGCTCCAGCAGCGATGCAGGGAGCTGTGTCCCGGAGCTGTCCCCCCAGAGGAAGCCGATGGGCCTGCTCTCCGTGTCATCCCCGCGGCACCGACCCCGATATGGGCTGGCAGCCAGGAAGCAGAGACTACGGCTCCCAGACGAATCGGAAGACACAGTCACCGATGTGTCTCCCTTGTCCACTCCAGACATCAGCCCCATCCAGTCCTTCGATCTAGCCTTAGTGAAGGACAGCCTGAAGAAGAGAGCCATGAGGAAGCAGGAGAACGTCAGTGTGGACCTCTCCAGGGAAGCTCCAGATTGGTGCCCTGACCAAGAAGGTGAGAAGAGCCCCCCAAAGACGGGCAAAACCAGATCTGAAATGTGCCACATGAGCTATACATCCTCAGAGTCTGTAGAGTCTGAGATTGGTGGTAGGCATGGCCAAAAGGTCTTAAATGATGCCTTGGATCTTAATCAGCTTCTCAAAGCTTTTATGAGCCTAgagaagaagacccaggagagCCTGGTGATTGATTCTCCCGGAGGAAAAGCGAGGAAGAATTTTTCGTTCAGCAACGAGGAGGTGAGGTGCATCGACAGGGAGAACCAGAGGTTACTGAGAGAGCTGTCCAGACAGGCTCCCAAACCCAGGATAAAAAGTGCCACCGCGAGAAAGCCCACTGGCTCTCCGGTCAAGCTCTACCACACCGCACTCAATCGGCAGCGAGAGCAGCAGAGGATCGAGAGAGAAAACATGGCTTTTCTGAAAAGACTGGAGTCTGTGAAGCCCACGGTGGGCATGAAGAGATCCGAGCAGCTGGCAGACTACCAGCGACAGGCCCAGTTCAATGGCTCTGCAGCTCCCTCCAGACTCGACAGACTGTCCGCCAGCAGGGGGGGCTCGACAGCCGTTGTGTCCAGCACCGCTGTCCCCAAGCCCAGAGTCACTGAACCCAGAACGGCCTGGTCCTGA

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126273 lncRNA upstream 395230 25667828 ~ 25725578 (+) True G101116
TU126264 lncRNA upstream 624889 25420890 ~ 25495919 (+) True G101107
TU126239 lncRNA upstream 711159 25408665 ~ 25409649 (+) True G101088
TU126237 lncRNA upstream 712272 25388061 ~ 25408536 (+) True G101087
TU126213 lncRNA upstream 1009750 25110798 ~ 25111058 (+) True G101069
TU126469 lncRNA downstream 234961 26364295 ~ 26365059 (+) True G101270
TU126470 lncRNA downstream 238263 26367597 ~ 26367905 (+) True G101271
TU126471 lncRNA downstream 240151 26369485 ~ 26369703 (+) True G101272
TU126472 lncRNA downstream 240758 26370092 ~ 26370326 (+) True G101273
TU126481 lncRNA downstream 345726 26475060 ~ 26475349 (+) True G101282
AMCG00015853 mRNA upstream 59723 26056102 ~ 26061085 (+) True AMCG00015853
AMCG00015848 mRNA upstream 65399 26046106 ~ 26055409 (+) True AMCG00015848
AMCG00015850 mRNA upstream 80139 26038348 ~ 26040669 (+) True AMCG00015850
AMCG00015849 mRNA upstream 90301 26018691 ~ 26030507 (+) True AMCG00015849
AMCG00015847 mRNA upstream 122947 25953359 ~ 25997861 (+) True AMCG00015847
AMCG00015852 mRNA downstream 8775 26138109 ~ 26150323 (+) True AMCG00015852
AMCG00015851 mRNA downstream 33900 26163234 ~ 26168850 (+) True AMCG00015851
AMCG00015866 mRNA downstream 67330 26196664 ~ 26224181 (+) True AMCG00015866
AMCG00015873 mRNA downstream 98352 26227686 ~ 26234075 (+) True AMCG00015873
AMCG00015869 mRNA downstream 112797 26242131 ~ 26253246 (+) True AMCG00015869
TU126202 other upstream 1255256 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3440035 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 5852523 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 7348842 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 7794904 18320056 ~ 18325904 (+) True G100007
TU126442 other downstream 134581 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 243819 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 1761218 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2448166 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3504104 29633438 ~ 29638781 (+) False AMCG00015918

Expression Profile