RNA id: AMCG00015868


Basic Information

Item Value
RNA id AMCG00015868
length 2892
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00015868
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26254913 ~ 26261489 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAAATCCTAATACGGAGTATACTATTATTCAGTGTCATTTGGAATGGAATTACAAGTGCAGCAATAATGGCTGTTAGTAATTTCCATCTTATTTACATTAACCACTTTGATACATTGTGTCTTTTAAGCACATGATCAAAGAAGGCACTCATAGATTGCTTGAGCTTTAATCGTTTTTTGGTCACGTCTTGTGGAGgaatcatttttaaatccatcATATTCTTGGCATTGATTGAAGTCATGTTCAATACCATTTCCCGGATATGTCTAGAATTATTAGAAACCTCTTTTAAGTCTCTCAAAAGAAGGACTTGGATCTCTTCACCTTTACATTTTTCCCATTCTTTGGTAATCATTAACCAGACATCATATAACGCAGCAACTTACTATTGATTTAAGTTATAATTAATCAACCTATCCTTTTGAAAGTAAAAGCAGTCAGTCATTCGTCAGCAGCAGTGTACACTGTGAGTCGCCATCACAAGACGAGAAGCAccttttcaaatttaaaatcctCAAGCAAAGTCCTCGGCTTCCTGATATTATGGCTTCGACAGAAACATCTGCGGAAGGACAATGCTTCCAAGAAGATAATTACCAGTACAACATGGGCTATAAGAACATTGGCAAATGCCTCATCATTAACAATAAACATTTCCTAGACATGAACGCCCGGTACGGCACAGAAAAGGATGAGAGAAAACTGAAGGAGGCTTTCGGGTCACTGGGATTCTTGGTGCAGGTGGAAAATGACCTCTCCAGTGATGGCATGCGACAGATCTTACAAACAGtTTCCAGAGAGGACCACAGTGAGATGGCCAGCTTTGTCTGTGTCATCCTTAGCCACGGTGAACAGGGCCTGATCTATGGGACCGACAGGGAAGCCTGCAGAGGAGACGAATTGGACTCTGGCATTGAAGCAGACTCGGTGACAGAGGAATGCCTCGAAATCACTGAGATCCCAGAGGAAGACTTTCTGTGCGCACACTCCACATCTGAAGGTTATTTTGCATGGAGGAGCCCAGTCTTCGGTTCAGTTTTTATCACGAGGCTTTGTGAAATGCTGAACCAAAATGGGAGAGACCTGGAGATTGCAAGCATCCTCACAAGGGTGAACCACCAGGTGGCGTTAAAGTTTGAATCAAACACTCCGAGCGACCCGTCGTCCCATAGAAAGAAACAGATGCCCTGTTTCATTTCTAAGTTGACGAAAGAACTGTACCTCCACAAATAAACCTTTACCAAACCATTGCCACTGAGTACTCACAACAGCACCATGCAGAACGAAACTGCCTGGGAAGTAATATGTTTAAGTACTATTGTTTAAGTAATATAAGTTGAATTAAGTGTGCACACCATTTCAAAAGACCAACAATAATTGTGATTAGCGGAAGTACCTGTATAGAAGCCCGCTTATTTCTTGTCTTCTTTCTTAGGGTTTCCTTTTTGCAAGCATGTTGTAACATCAACTAAAGGCAcaagtgtacatttttcttgttttattttattcagtcttCCAAAAACACACCAGTATTTGCATTACAGTATCATACTAGGAGTGCTTTTGTCTTAGGTTTTTGTTTAGTACTTTACACTAGATGACACTGGAGAGATACTGTTTTGTGGCAGTAGATGTCATTGTAACCCATAAAAGTGCAGAGAGTTTCAACACTCCTCCTCTTGTTAACAACAGCTCTTCTGTTTTGAATACTAAAGTCACAAAACCCTGGACAGCCTGTGGTTAGAAAATGGTCATTGTTTTTTGGAAGGTATAAAGTACACATTTGCTTGATATTTGAGGTGTATCTAACCCTGAACAGAGAGTGAAAAAGGTCCAAAACACTGGAATCATGTAAGGTTTACACAATATGTTAAAGAAACTGctctgtaaatattaaaatattaaaatattatttatattgctttaGGGGACAAATAAGTGAAATATGATATGTTTTCTTTGACTAGCAACCAGAAATGAAGCAAAGCTATTGGTTCAGACAGGAAACACACAGCGGCTAGTGGAATAAACCCATCGACTACACTAGACTAAGTCTGTTgcctgaaacagaaacaggacACTTGTGAATTGGCAAGGCAAGGCTATTTAAACTAATCCAAAACTGTGTCCCCTGCCATGTGTTTGAATTCACCTCCCCCACTCCCTGTCCGCTGGTCCGGCTGGCAAATGTCCGTCTGACAGGGCCCCCTTGAAGAGCAAGACCAGAGTCCCAACTGTCGAATATAATTGTAAGGTATTGTGAAGAAACATCACTTCATCGCATTCATTGTCCTGAATGAAATTTGAGAGAATATGGCCCGATATTAGaatagcatttttgttttagatgtattatttttaaacataggGCAAGTGAAGCAGAAACCCTGCTAGGAGAAATCTAGTTTGGAAAGGCTGAAACaggacattttgtttcttatttctaTCATAATTCTAGAATATTAGTAGATAATTATCATATCCTATTGACAGATATGTCTTCTTAATGAATGGTAGAATGTACAAGCTTTACTTTTTCCTCCTGCttgatgtttttcttatttatttttttattttttaatgttgacaGACACTTAGTCATGTGTTGTTTCCAATTAGGATGCGAGATTGGTACAGGATACAGGAAGTTTTATTGGATGACATAATGGACCATATTCCAAAAACATCTATCATTGGTGCTTAATTAACTGCTGTCTCTCCAAATGAGGAAAAAAGGGGGGGAGAGGGATAAAAagttaacaaaagcaaatttcTTGCTCGgcttctttttcatattttaaaaagagtgGTACATTTTACAGGACATGGCAATTTTAGGAATATGGCCAATATCCTTATGATCTAACCATTAGTTATCTGAAACTCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126273 lncRNA upstream 529335 25667828 ~ 25725578 (+) True G101116
TU126264 lncRNA upstream 758994 25420890 ~ 25495919 (+) True G101107
TU126239 lncRNA upstream 845264 25408665 ~ 25409649 (+) True G101088
TU126237 lncRNA upstream 846377 25388061 ~ 25408536 (+) True G101087
TU126213 lncRNA upstream 1143855 25110798 ~ 25111058 (+) True G101069
TU126469 lncRNA downstream 102806 26364295 ~ 26365059 (+) True G101270
TU126470 lncRNA downstream 106108 26367597 ~ 26367905 (+) True G101271
TU126471 lncRNA downstream 107996 26369485 ~ 26369703 (+) True G101272
TU126472 lncRNA downstream 108603 26370092 ~ 26370326 (+) True G101273
TU126481 lncRNA downstream 213571 26475060 ~ 26475349 (+) True G101282
AMCG00015869 mRNA upstream 1667 26242131 ~ 26253246 (+) True AMCG00015869
AMCG00015873 mRNA upstream 20838 26227686 ~ 26234075 (+) True AMCG00015873
AMCG00015866 mRNA upstream 30732 26196664 ~ 26224181 (+) True AMCG00015866
AMCG00015851 mRNA upstream 86063 26163234 ~ 26168850 (+) True AMCG00015851
AMCG00015852 mRNA upstream 104590 26138109 ~ 26150323 (+) True AMCG00015852
AMCG00015870 mRNA downstream 8902 26270391 ~ 26305794 (+) True AMCG00015870
AMCG00015872 mRNA downstream 45138 26306627 ~ 26308732 (+) True AMCG00015872
AMCG00015867 mRNA downstream 71993 26333482 ~ 26356094 (+) True AMCG00015867
AMCG00015875 mRNA downstream 259701 26521190 ~ 26525630 (+) True AMCG00015875
AMCG00015876 mRNA downstream 265621 26527110 ~ 26562104 (+) True AMCG00015876
TU126202 other upstream 1389361 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3574140 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 5986628 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 7482947 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 7929009 18320056 ~ 18325904 (+) True G100007
TU126442 other downstream 2426 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 111664 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 1629063 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2316011 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3371949 29633438 ~ 29638781 (+) False AMCG00015918

Expression Profile