RNA id: AMCG00015869


Basic Information

Item Value
RNA id AMCG00015869
length 2054
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00015869
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26242131 ~ 26253246 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGAAAAGACGTTTGTGTGGTATAAGCAATATATTCAATGACATGTATACATTAATAGCAAGCCAAACCCATGCTGAAAGATGCACAGATGCGCAGATGCACTCACAGCCCAGCTCAGCCATGGCGCAGGAGTTGCAGCTGCTGTGTTTCGGTTTGCGTCATCTGGCGTGGTGACGTCAAGGCGCAGGGCAGGACTCTGGCGTAAACAAGCCTTTGAGCATCGTGTGGACGACGGTCTTTTGTTTCACATGAGGGGGAGTTTACTCACAGGCTGGGCTTGTACAAGTGAGCTGAAAAACACAGCAGCTCGACACGTCTGAACGGAGCAGCGTCGTAATATAATGTCAGACGTTACGGACGCCAAAAAGGTGGCTGGCTCAGGTGGGGATGCTGCGGATGCTAAGCCTGTTAACAACCAAGGATCAAATCAACAATCCAGTGATGGAGCGTTGCAAATGGATGCAAAACCACATGGGTCACATTCCTATAGATACAGCATGAACTATCCAAGCATCGGCCAGTGCATCATcattaacaacaaaaactttGACAAGAAGACGGGGATGAATATCCGCAATGGAACTGATGTGGATGCTGGGAATATGATGAAAGCGTTTAAAAAGCTGGGCTATAAGACAACGGTTTACAATGACCAGACATGTGACCAGATTTCAAAGACCTTGAAGAAAGTTGCCAGCGATGACCACAGCAACGCAGCGTCCTTCGTGTGTGTGCTGCTGAGCCACGGGGATGAGGGGGTGCTGTTCGGCACAGACGGCAGCATGCCCTTAAAGGGGCTAACCGGCTACTTCAGGGGAGACCACTGCAAGACGCTGGTCGGCAAACCCAAGCTCTTCTTCATCCAGGCCTGCAGAGGCACTGGACTGGATGCAGGGATTGAGGCCGACAGTTCAGACGCTGGCTCAACGGAGAGGATCCCAGTGGAGGCGGACTTCTTGTACGCGTACTCTACAGCCCCAGGTTACTACTCCTGGAGAAACACAATGAACGGCTCCTGGTTCATTCAGTCCCTGGTGGAGATGCTGGAGAAGTACCACAAGGAGCTGGAGCTCATGCACATCCTGACGAGGGTCAACCACAAGGTGGCACTGGAATTCGAGTCGGCCTCCAACATCCCCGGCTATGATGCGAAGAAGCAGATCCCTTCCATCGTTTCCATGTTGACCAAGGAACTGTACTTTTCCCACTGATGatgaattaaaacaagattaagAAAGGGAAGCTGACTGGGTCCATTAAGCTTTAGGGTtctgtttttaagcatttttttaattgtagctGGTTAATAGTGATGGTCAAGGTGCAATGAAGATAAGACCGAAGAGTCTGTTGACACCTGGAGTGTTATGCAGTTTTCAGCAGGACTGCGTTTCCGTTTATAATTGACGTGTTTGTGATGTTTATATCTTTCTGCTTTTTCAGTCGTGCCACTGGCCTTTGTATTGGGAGACATTTGAGAAccttttctgaatgtattttgtagcaCATCATTCTTATACGTTCTCTGTTTTATATCCCATCATCTTTCTAACGATTTTGTACAGGACAGGGGCGTAGCTAATCTCCTTTCTACAGTGCAGCTAGAACTTCCATTCAAGTGACTGAAAAGTGTGTCATTCGATTTCTTAATCTAAGACAATAGACACAATTTTATGCATTAGCAGgatatgcatttgaaaaaagctGTCTTGATGGCAGCCGAGTTCCTGTTATATACACCTGGTCAGGGAGGAATAATCCTGTTGTCGATGGCCTTGATTCAAAGTGCTTTTTATATTGTACCAGCGAAAGGATAATAATGAGCTAATGTGATGGTACAGATCATACAGAGGTGTTCAGGGAAAGGCAGTTGTGGAAATTCCATCCTTTGGGTCATGAACAAGGGATCATTTTGTGCCACTCTCAACTGAATTAAAGctgtacacaaataaacaccTTTACAATCTCGAGCTGTTTTGAAAAAGCCAGTTCACCAAACATGGCATGTAATCgtaggtgttttgttttttaaataaaagaactTTGACTTTCA

Function

GO: NA

KEGG:

id description
K02187 CASP3; caspase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126273 lncRNA upstream 516553 25667828 ~ 25725578 (+) True G101116
TU126264 lncRNA upstream 746212 25420890 ~ 25495919 (+) True G101107
TU126239 lncRNA upstream 832482 25408665 ~ 25409649 (+) True G101088
TU126237 lncRNA upstream 833595 25388061 ~ 25408536 (+) True G101087
TU126213 lncRNA upstream 1131073 25110798 ~ 25111058 (+) True G101069
TU126469 lncRNA downstream 111049 26364295 ~ 26365059 (+) True G101270
TU126470 lncRNA downstream 114351 26367597 ~ 26367905 (+) True G101271
TU126471 lncRNA downstream 116239 26369485 ~ 26369703 (+) True G101272
TU126472 lncRNA downstream 116846 26370092 ~ 26370326 (+) True G101273
TU126481 lncRNA downstream 221814 26475060 ~ 26475349 (+) True G101282
AMCG00015873 mRNA upstream 8056 26227686 ~ 26234075 (+) True AMCG00015873
AMCG00015866 mRNA upstream 17950 26196664 ~ 26224181 (+) True AMCG00015866
AMCG00015851 mRNA upstream 73281 26163234 ~ 26168850 (+) True AMCG00015851
AMCG00015852 mRNA upstream 91808 26138109 ~ 26150323 (+) True AMCG00015852
AMCG00015854 mRNA upstream 112797 26120808 ~ 26129334 (+) True AMCG00015854
AMCG00015868 mRNA downstream 1667 26254913 ~ 26261489 (+) True AMCG00015868
AMCG00015870 mRNA downstream 17145 26270391 ~ 26305794 (+) True AMCG00015870
AMCG00015872 mRNA downstream 53381 26306627 ~ 26308732 (+) True AMCG00015872
AMCG00015867 mRNA downstream 80236 26333482 ~ 26356094 (+) True AMCG00015867
AMCG00015875 mRNA downstream 267944 26521190 ~ 26525630 (+) True AMCG00015875
TU126202 other upstream 1376579 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3561358 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 5973846 20267407 ~ 20268285 (+) True G100338
TU125009 other upstream 7470165 18744887 ~ 18771966 (+) True AMCG00015725
TU124919 other upstream 7916227 18320056 ~ 18325904 (+) True G100007
TU126442 other downstream 10669 26263915 ~ 26264308 (+) True G101248
TU126474 other downstream 119907 26373153 ~ 26377699 (+) True G101275
TU126639 other downstream 1637306 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2324254 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3380192 29633438 ~ 29638781 (+) False AMCG00015918

Expression Profile