RNA id: AMCG00015876


Basic Information

Item Value
RNA id AMCG00015876
length 4962
RNA type mRNA
GC content 0.49
exon number 25
gene id AMCG00015876
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26527110 ~ 26562104 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGGCATGCAGGAGCGCCGAGAAAACCAAGGAAATACAGTGGACAGCAGCTGGTACATGGACACCGTGGAGGCGCCCGTGTGGGATGCTGCTCTGAGGGAAGACAGGGATGCAATGTGCAAGAAGCCTGATGGACACTGGAGTGTGCCTTATCAGAAAGTCAGCGTGGAAGCATACTCTCACATCAAAGATCACCTACGAgACAAGGGCTTAACCGCTGTGGTGCGTGATGACGATCGACAATTTCAGCAGTTTCTGGAAAATCCTCACAAGATGTTGCAAAGCCTTACAATATTGCAGGAATCCTACTGCCCCGCGACTGAAGAAAGCAAGAGAGCAGAATCTTCAAAACCTCATAATCCTTTAGACGTCAGTAACGATATGTCAACAAACACAGAATCTCCTAACTCTTATAGCAGCACAAGAGAGATGGGATTTGCTGATGAATATGAGAATGTCATTGAGCATTCAGATCATTATAAGATCAAAGCAATTACCCACGGGAATGGCAAAGTGCCCTATTCTttcaagaagaaaatatttatgaTCTATATTTGTGGAGGATATAAAGATACAGCAGTGGAGAGAAATGCACTGAGGGAGAGTGTGTACCCTCAGCTGTACCTTTACTGCAAACAGCGAGGCTATGACTTCAAGCTGGTTGATTTACGCTGGGGTGTGGAGGACGCCGTCAGTGACTGTCACAACACAGTCAGCCTGCACTTGGATTTGCTCAGGGACTGTCAGGACTTAGAGGGGCCCAATTTTTTTAAGTGTCATTCAGAATCACAGATACATGTTTGTAATTTCTGTAACGTTTTCCAGCTGTTCACAGGTCAGAAGCACGACACTCTAATGTTGCCAGTCACCGTCCCAAAATCTGTCTTTGAAGCCATCGTCAGTGCAATTGAAAGAAAGCGAATGGAAGTTTCAAAAAGGAAGGTGACTGAAGCCAAGTCAGGGGTGATCTCAGAGTCCAGTGTTTCGCTGAAAGACACCAACGCTGCTGGCTCTCATACCCATGAACTCCAAAGTTCGAAAGAAAAGcctgtgattttaattaacaacagCCCTGTCCCGGATTCCTCTACCGAGGGTGAGGTCTTCAGCATTGTTCACATAGAAGCAAAATCTGGGTCTGATTTCAAGAAGGAAATCAGTCTCCTTCACTTGTGGTACAAATTTGATGAAAACCATGTTCCTGCAGTGTACTGCCTTCTGCCTGTCAGTACTCACTACAAAGACATTCTTAGTAAAGACCCACTACGGAGACAGCAAGCAAAGAAGAACTGGTTGCATACTTCCCAGAAGATCTGCAGCATCTTCCAGTACTATGGGTCAATAGCAATGGGAGAGAAAACAGCCTCTTCTCTTCTTAGGACAGTACTGGATTTTGAAGTGGAGCAGGGCCTTCGGACAGTTGATCCCCCAGAAAATCATTGTACCTGGTACAAAAGGACCATCACAGACATCAAGTACAACCTACGCAGTGAAAAAGCTTCAGACTACATTGATATTTTGGCCAGCGATCCAGAAATAAACCAGAAGTTATATTCAGCCCATCAGAACTTCATGGAAAACATCCACACAAAGCTGCGTCACACAAATATCTTCGAATACAGTGTGGGCTGGGGGCGAGATGGAATCAACCCTAAGCTCAACAGGTCCCATCTCCATTACACTGAGCGGATCTGCAGTGATTTCCATAGAACTGTTACTGGCCATTTAAACAGAGAGATGCGCTGTGAGCTTCAGGGCTGTGTTGTGGATGGACTGAGAGAAGCACTTGAGAGTTCGTGCCAGAAGCCCGTGGTTCTCATTGGAAGACCCGGAAGTGGCAAGAGTACAGTAATGGCCAGGGCTGCTTATCTGGCTCAAAGCTGGATCCCTGGAAACGTGAGGGTCCTTGTGCGTTTCGTCGGGGTCACTGGGGAGAGTAGAAACGTGCGTCTGCTTCTTCAGAGCTTGTGTTTCCAGCTCTCTGACATGTGCGATGTTCAGGCAAAGTTCTCCGAGAGTCTGCATGAGCTGGCCAATGAGTTCCTTTCTCTGCTTGAGTCAGGGAGAGAGGACAGCCCTGTAGTGATATTACTTGACGGTCTTGATGAACTCTCTGAAGATCATGCCTCAGACATCTCCTGGTTGTCACCTGTCctcccaaaacatgtacatCTTATAGTATCTGCATCAACTGGATCCAGCTGCTTAAAGACATTAGAGGAGCTGACGGTGAAGCCAATCACTGTATTGATGAACCCTCTCAGCCCAGATGACATCAACCGAATGCTAAGGAGAGTGATGGAGAGGGATGGGCGGAGATTAGCACCTGACCAATGGAAGATTCTGACAGAGGCCTGCATGTCCTGCCCGTGTCCACTGTACCTGGAGAATGCCTATGCAGAGAGCAGGCTGTGGACGTCTTTCACGTCACCAGCACATCTGCCCCAGGACCTCTCCAAGCTCTACCAGTCTACTTTGCTCAGGCTGGAAAAGGAGCACGGCCAGCAGCTGGTGAGGAAAACTGCGTCTTTGATCACGCTGTCCAGGAACGGGATCACTGAAGAGGAGCTTCTGGACTTGTTGTCCCTGGATCAGAGAGTGATGCAGGAGATGGCTCTGTCTCATAAACCTCCTGCTCCTCAGTTCCCTTTCGTCCTGTGGGCCAGGCTCAGGCGAGACTTAGGGGATCACCTGATGGAGCAGAACACTGACAACACCTATGTATTTAACTGGACCCATTTAGCTTTAAAGagcgcctgtgaggagaggtacCTGAAGGCAAAGGAGGCCCAGGTGTCCATTCACGCCGAGTACGCTGACTACTTCTTAGGAAATCGGTCGCCCCATTCCAATAGCAAAGCACACAAGTTTATATTTCAGCCATTGACCTGGGTGCTGGAAAAAGACTCGATAAAGAACTACGTTTTCAACATCCAGAAACTCCGCAGCGTTTCATACCACTTGATCAAGGCAGGCCAGATTCCAGCTCTGTTAACCGAGTGCCTGTTCAACTACGAGTTTCTATTGCACAAAGCGTGGGGCTTGTCCATCGTTGATGTGGAAGAGGACTTGAAGTCAGCGGTAACACCAGAGAAAGAGCTAGTCGATGTAAATGTGCTGACAGAGGCTCTGCGGCTGTCTAAGAACGTCTTGCTCCGAGACCCGTGTCAACTGGCCTCCCAGCTAGTTGGGCGTCTATATGAGATCGTCTCCAGTGACCAGCCAGTGGCACCAGTGCTGCTGCTCCTCACTGCCTGTGCTGCTGCCCTCCTTCACCTGCCTCCTGCCCCCGGGAGGACTGCTACACCACCTGCTGGCAGGAGCGGCGCAGAGGCCATGGTGTTCAGTGCCAGGAAGGGAGAGGTTGTGAAGCAGCTCCCGGCCCAACACGGTGTGGCCTCGGTACAGGGAGTTGAAGTGACAAAAGAATACTTTCTCATCTTTTGCAGGTACCCGTTCATGAGGAGCAGTGAAATTGTGCACATTGAGCTGTTCAGCACCAGGAGTTTTGAGTTTCTTCGCTCCATTAAGGGCTGCTGTAACGACCCTGTCTCCAACCTCAGTGTGAACCGAATAGGTTCCCACGTGGTGGCGTTCTGCCCTTCTGCAGACACCAATACGACTGACATCATCTCCTGGAACCTGGAGACCGAGGACCACAAGCACATCGTGAAATCGCCCGGCTTGATAACCGGAGGTACCTGCTTTGACCTGCGATTCTGCCTGGGAGTGTGCAACAATGAAAACTACCTCCGAGTGTGGAATCTGGCCTCGAAGATCAATGACCAGTCTCTCTGTTACAACGTCCACAGAACTCTTCTGATCTTTGACCTCCTGAAGAAGCGGTATATTAAAAAGCAGACAGGCCTGTACATCATCCCCTGTCAGAAGCATGAATACAGGATCCTACAGGGCGACCTGCTGTTGGGACTTTCAGAGAACAGAGACCATTTGATCATGTGGAGCCTTGAGACTGGCTTTATCAAAGGCCGATTGAAGGCTTCATATAAGGAGCAGCCATTGATGTCCAACTCAGTTCAAATTCCTAAGAGCTCAACTGATAAAGGCTTCCAGGAGCTCCAGTACAAGGCAGAGAGAAGACATGACTCTAGAGCCCACATGACTCCCTGGGAGAGACGTAACGAGACTAAAACGGCGCAGAAGAGGAGGCTGGAGAGGGAGGTGAAGAAGGAAAttgaaaagcagcagcagttcTGTAACGAGAAACACAATACCATCGATCAGTATCTCATCAGCCCAGATGAGCAGATTGCGGTGTGCTCCTATTTTGCGCACCATCTGAATGTGTTCAGTCTGCTGTCTCAGACCCACCTTCACACACTGGAAGACCGGACTTCAATGCTTTTCCTTCACAATGCCGCCCTCACGTACAGCGGCAGCTACCTGGCCATTTCAAACTACAGCGACACGGAGAAAGTCAGCTATGTGACACTGTGGGATGTACAAAATGGGAAGGTAAGAAAACGACTGAAGAATGAGCCAAGTGTTTGCTGTGTGGCCATCAATAATGACGCAAGCAGGGTTGTCTTCGGGGTCATGGAAGCAAACAAGCTGAAAGTTTGGGATCCTTTCAGAAGAGTCCATAAAACCATTTCTGGATACGAAAGCCTGAATCTGGGAGTGAACAGCAAGCTGTACATCACAGAGGAGGGAGCGAAAGCAATCCTGCTCACCGgtGAAATCAGCCTCTGGGACCTGAACACTGGCATGGTTATATCCATCTTCACACCTGACAGCAGAATCCAGTGTCTCTCACTGACTTGTGACAGCCGAACCGCTCTGCTCGGACTGAGTGACAGCGCCACGCTCATTACCCTGAAGCTCATGTCAAAAGAGATTGTGAAATCCTCGTCGGCTGGAACAGACCTGTTCGGGGAGCAGTCGAGCACCAgcgaggaggaagaggaagaggatgaaGAACTGGTTTTGAACAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126481 lncRNA upstream 51761 26475060 ~ 26475349 (+) True G101282
TU126472 lncRNA upstream 156784 26370092 ~ 26370326 (+) True G101273
TU126471 lncRNA upstream 157407 26369485 ~ 26369703 (+) True G101272
TU126470 lncRNA upstream 159205 26367597 ~ 26367905 (+) True G101271
TU126469 lncRNA upstream 162051 26364295 ~ 26365059 (+) True G101270
TU126517 lncRNA downstream 7000 26569104 ~ 26572523 (+) True G101306
TU126541 lncRNA downstream 17609 26579713 ~ 26579971 (+) True G101320
TU126564 lncRNA downstream 144772 26706876 ~ 26707101 (+) True G101340
TU126615 lncRNA downstream 878923 27441027 ~ 27441243 (+) True G101381
TU126621 lncRNA downstream 1107328 27669432 ~ 27669753 (+) True G101387
AMCG00015875 mRNA upstream 1480 26521190 ~ 26525630 (+) True AMCG00015875
AMCG00015867 mRNA upstream 171016 26333482 ~ 26356094 (+) True AMCG00015867
AMCG00015872 mRNA upstream 218378 26306627 ~ 26308732 (+) True AMCG00015872
AMCG00015870 mRNA upstream 221316 26270391 ~ 26305794 (+) True AMCG00015870
AMCG00015868 mRNA upstream 265621 26254913 ~ 26261489 (+) True AMCG00015868
AMCG00015877 mRNA downstream 617 26562721 ~ 26567558 (+) True AMCG00015877
AMCG00015882 mRNA downstream 110640 26672744 ~ 26699429 (+) True AMCG00015882
AMCG00015886 mRNA downstream 1255732 27817836 ~ 27840281 (+) True AMCG00015886
AMCG00015887 mRNA downstream 1337293 27899397 ~ 27963113 (+) True AMCG00015887
AMCG00015890 mRNA downstream 1443980 28006084 ~ 28018896 (+) True AMCG00015890
TU126474 other upstream 149411 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 262802 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 1661558 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 3846337 22680210 ~ 22680773 (+) False AMCG00015796
TU125356 other upstream 6258825 20267407 ~ 20268285 (+) True G100338
TU126639 other downstream 1328448 27890552 ~ 27992014 (+) False G101400
TU126748 other downstream 2015396 28577500 ~ 28580829 (+) True AMCG00015901
TU126954 other downstream 3071334 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 3603924 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 4241985 30804089 ~ 30809238 (+) True G101870

Expression Profile