RNA id: TU126748



Basic Information


Item Value
RNA id TU126748
length 1997
RNA type TUCP
GC content 0.41
exon number 4
gene id AMCG00015901
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28577500 ~ 28580829 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gcaggggatcaaatactttttttcctcactgtatatctaatcatactttaatgtttaaatgactGCCTCCTTCCAAAATAAATTTGCTTCCGTGCAGGGAACCCAGAGGAATTGATTGCAGAAATGGGAATGTAAACTTGCAAGCCTTCCAGAAAGTAGTATTGatgttaaaaatcaaacaaaaaatgtctatAAGTCTGTGTATCTTAAAATGGTTTGTGCTGTATGTCCCGTATCTCTCGGTGCACCGCTGGAACTGAAATAGGTCTTCGCCCAAGGGTTGGGGTGGTTGTGGGTTCCCCACAGTGCTGGATGTATAGTGGTCTTGTTCGTGCGAGCCGTGTGGAGAGGGAGTTGTTTCTTCTCCAGCACAGTCCCgggcagcagagagagggacactGCCACTCTTAGCTGGGAGCTGAATAGGACAAAGACCCCTTTGTGCCCTAATATACAAACTCATATTTACAAGACAGCCATTCAGACCTGCAAGACACTCCTGCACAGAGCACAGCAAGAGCTGGAAAAGATGAAAGCGCCCCTCGCCATCCTTGCCCTGCTGGTCGGGTTTGTGTCCATAGACGCCATGCCGAAGAGCCGCCTGTCCTGCTCCAAGAAGATCCTGAAAGACAGAAACTGCCACAACATCCCCAGTGGGGTGGATCTGCTGAGGAGCATCGACACGTCCCTGCAGGACCACTTCTGGGAGGGGGACGGCTGCGAGACCGTGTGCTACTGCAACTTCAGCGAGTTGCTCTGCTGTCCACGGGACGTTTTCTTTGGACCGAAAATCTCCTTTGTGATTCCGTGCAACTCCAAGAGCCCATGAGCGCCGGGCAGCTGCGAGCGGCGCGCCTGTCCAGGAGCGGCAGGATGACCCGTTTGCGCCTCTGTCGACTTTAAATCACTTTATCAACCCGCCGTGCAATAGTGTCGTACCTATCACCGACCTGCATCTCTGACAACGTGTACTTATACGACAGTTAAacgaaaatgtgttttgtgaggCTATAAGCTGGTTTTACGTCTTGATAGCCAAGTATTTGTGGTAACGTGTTACCAGTCAGGATCCCCCACAAAATCTATGgcttttgaacattttcaacagCACAAGTGCCTTTAAATCCTGCGATTCCAGGGCTCTTCTGTTTGTCATTTTACTTCCATTCTCAAAAGTATTCTTGTTTGGAATCAATAGtcattattatgttgttgtttcataataaatattcaatCCCAAGATTATACtcaactaataataatataccattCAATCTAATAATGGTATTCTCTTTGGATTCTAGTTTAGCCAAATTTAAGTTGTATGACAAACAGATTTATCTGGTACCAGAAACCAGAAATATTACCCATTGAACCCATGTTCACACAAAAgtcttaaaaatatgtaatctgtAGTTTTCTAATGCTTTCTTAAAACTTCTTAAAATATTAAGAGAAAAACTTTTATTTACTTACCCAAGACATTTGGAGACAGAGGGAACATATATATGTACTACACTAGGGAAGTATTTCTGTGTGGGTTTTATGTAACTGAATGCTAAACACATAATCACTTTTTTAACTAATTGTATGTATAACAAAAACTGGAACCATTATTACAAGCTGCTACGctgtttgaaatatattctTGTATCCATGCAATTCTGTTCTCTATGTAATTCTCAAAAGAGTGTTTACatgatttaataaagcatttcactgtgttttactACCTGACACATTTATGATAGCTTGATGGCAATGTAACAGGATATGAAACAAGATATGCATCTCTGCCCCTGAATGTATttcctgtatattttaaattaacttagaTGATTAATGTAGCAAAgacattgtattttacagattatCTTCCATTGCTTGCTCTATAATTTGATTTTTCTCTTCCTTcagattaaaaactaaaataatgaatggcTACAAAAGAAGACAACTTGCTACACAGAATACAACCCAAGGTTAACACACAATGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126744 lncRNA upstream 131283 28445916 ~ 28446217 (+) True G101486
TU126643 lncRNA upstream 580554 27995810 ~ 27996946 (+) True G101404
TU126637 lncRNA upstream 587814 27987032 ~ 27989686 (+) True G101400
TU126621 lncRNA upstream 907747 27669432 ~ 27669753 (+) True G101387
TU126615 lncRNA upstream 1136257 27441027 ~ 27441243 (+) True G101381
TU126763 lncRNA downstream 8744 28589573 ~ 28591059 (+) True G101504
TU126833 lncRNA downstream 586106 29166935 ~ 29167213 (+) True G101555
TU126834 lncRNA downstream 593948 29174777 ~ 29177324 (+) True G101556
TU126836 lncRNA downstream 601702 29182531 ~ 29182869 (+) True G101558
TU126838 lncRNA downstream 605276 29186105 ~ 29186327 (+) True G101560
AMCG00015900 mRNA upstream 33971 28541050 ~ 28543529 (+) True AMCG00015900
AMCG00015895 mRNA upstream 136188 28432038 ~ 28441312 (+) True AMCG00015895
AMCG00015897 mRNA upstream 177972 28396972 ~ 28399528 (+) True AMCG00015897
AMCG00015894 mRNA upstream 190812 28384914 ~ 28386688 (+) True AMCG00015894
AMCG00015896 mRNA upstream 204838 28339412 ~ 28372662 (+) True AMCG00015896
AMCG00015902 mRNA downstream 5596 28586425 ~ 28588280 (+) True AMCG00015902
AMCG00015908 mRNA downstream 498600 29079429 ~ 29107579 (+) True AMCG00015908
AMCG00015912 mRNA downstream 610277 29191106 ~ 29195801 (+) True AMCG00015912
AMCG00015911 mRNA downstream 672057 29252886 ~ 29259988 (+) True AMCG00015911
AMCG00015913 mRNA downstream 759655 29340484 ~ 29352375 (+) True AMCG00015913
TU126639 other upstream 585486 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 2199801 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 2313192 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 3711948 24865089 ~ 24865552 (+) True G101061
TU125724 other upstream 5896727 22680210 ~ 22680773 (+) False AMCG00015796
TU126954 other downstream 1052609 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 1585199 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 2223260 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 2681632 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 3159699 31740528 ~ 31746116 (+) False AMCG00015959

Expression Profile