RNA id: AMCG00015917


Basic Information

Item Value
RNA id AMCG00015917
length 1494
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00015917
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29549604 ~ 29551097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAACTCAAGTATTACTGACACTAGTACTGATCTCCCCTCCCTTAGGTGTCACCCTGTGGGATATAGAAGCTGTACGCAAGGACCTGGATGTACATCCAAAACCAAACACAGAGATCAACGTCACAGCGTCCAACTCCCTCCATGAGAAGTCCAGCCTGTTGGATGTGAGCTCTTCCCTGAAGGCCAGCTTCCTGGGGGGGCTGGTGGAGGTGGGAGGGTCGGCCAAGTATCTGAATGACACTGTTACCTCCACACAACAGTGCAGGGTCACCATGCAGTACAAGCAGACCACAGAGTTTAAGCAGCTGACCAATACCCAGCTGGGCAATGTGACGTATCCCAAAGTATTTGAGAAGAAGACGGCCACTCATGTCATCACGGCTGTGCTGTACGGAGCCCAGGCCTTCTTGGTATTCGATCAGACAGCTTCCAAAAACGAAAGTAAGCAGGACATCCAGGGAAACCTACAAATGATGGTCAAGAAGATCCCTTCGTTCTCTATCGAAGGCGATGGAGGTCTGAAAATGACAGAAGAAGACAAGAAGAAGGTGGAAAAGTTCAGCTGCAAGTTCTATGGTGATTTCCAACTGAAACAGAACCCCACCACTTATCTGGAAGCTGTCCAAGTGTACAGCAAACTCCCAGAGCTGCtgggagagaagggggagaaGGCTGTGCCAGTGAGAGTGTGGCTGTATCCTCTGATTGACCTGAACTGCAATGCAGCTCGACTGGTACGAGAGATCAGTGTGAGTCTGGTGTCAGAGGCTGAGAAAGTGCTGGAGGAGCTTACTGAGGCCTATGTGAGAAGCAACAGTTTGATCAGCAACAGCTTGGTCAGCCACTTTACAGATCTAAAAAACAAGCTGGAAGATTTCCAAGGCAAGTTCAAGCCATACAAGGACATTTTCCAGAAAGCTCTGTCCAGAATCCTGCCGGCCATACGGGGGGGTGGGAAGGAGGAGCAGGCATTGGTTGACATCCTGCAGGTCCATCACAAGTCACCCTTAACTCACAAACAATTGGAGAAGTGGCTGGATGACAAAGATGATGAAATACAGATGTTGAGATCCTACACCGTTACAATGAGCATCCCTATTGTGTCAACTGCTGAGCTCCAAGGGCTCCTCTTTGATCCCCAAATAGACACTGTCTTCTGCTTCACCTTCACCTCACTGCAGTATGAAGACCAATACCTCTCAACAGTGACTCAGTACCTCCAGTCTGAGGAGTTCAGGAAACTGGAGATTTCAGGTTCAGTCCTGAATTCCCTAAAAAAGGAGCCTCAGCCATGGTTCAAGTCACCTGAGATCTCAGCCTGGATGAGAGTGAACCTTCAGCTGTTCTTAGAATTGTCAAAGACTTATATggatgaaaagaaaaccaagtTTGTCATCACTTCCATCTCAGACCCCTCTAATCCAGGGGCATCCATCCGCTTGTATAAGCATGGGAAATTAGAGGATCCCCAATTCAAGCTTGGTAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126838 lncRNA upstream 363277 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 366735 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 372280 29174777 ~ 29177324 (+) True G101556
TU126833 lncRNA upstream 382391 29166935 ~ 29167213 (+) True G101555
TU126763 lncRNA upstream 958545 28589573 ~ 28591059 (+) True G101504
TU126931 lncRNA downstream 27432 29578529 ~ 29595891 (+) True G101638
TU126990 lncRNA downstream 154880 29705977 ~ 29728715 (+) True G101678
TU127198 lncRNA downstream 1043981 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 1043981 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 1716308 31267405 ~ 31287766 (+) False G101930
AMCG00015914 mRNA upstream 63022 29482269 ~ 29486582 (+) True AMCG00015914
AMCG00015915 mRNA upstream 139680 29400511 ~ 29409924 (+) True AMCG00015915
AMCG00015913 mRNA upstream 197229 29340484 ~ 29352375 (+) True AMCG00015913
AMCG00015911 mRNA upstream 289616 29252886 ~ 29259988 (+) True AMCG00015911
AMCG00015912 mRNA upstream 353803 29191106 ~ 29195801 (+) True AMCG00015912
AMCG00015916 mRNA downstream 21404 29572501 ~ 29578835 (+) True AMCG00015916
AMCG00015918 mRNA downstream 72948 29624045 ~ 29652938 (+) True AMCG00015918
AMCG00015919 mRNA downstream 114485 29665582 ~ 29679948 (+) True AMCG00015919
AMCG00015922 mRNA downstream 175277 29726374 ~ 29737732 (+) True AMCG00015922
AMCG00015921 mRNA downstream 194331 29745428 ~ 29761435 (+) True AMCG00015921
TU126748 other upstream 968775 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 1557590 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3171905 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 3285296 26263915 ~ 26264308 (+) True G101248
TU126202 other upstream 4684052 24865089 ~ 24865552 (+) True G101061
TU126954 other downstream 82341 29633438 ~ 29638781 (+) False AMCG00015918
TU127075 other downstream 614931 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 1252992 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 1711364 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 2189431 31740528 ~ 31746116 (+) False AMCG00015959

Expression Profile