RNA id: AMCG00015921


Basic Information

Item Value
RNA id AMCG00015921
length 4029
RNA type mRNA
GC content 0.50
exon number 22
gene id AMCG00015921
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 29745428 ~ 29761435 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAGATCAGACATGTACTGCTGGGGCGACAATGCGAGTGGCCAGCTGGGTCTGCAGCTGCCAGACCCCGATAAAGTGGTCCCGGTTCCCACGGAAAGCGCCTGCGTGCCGGGCAGCACCGTGGCGCACATCGCGGCGGGACAGCGGCACAGCGTGTTCCTCACGGCGGGGGGAGCCGTGCTGTCCTGCGGGGGAACTGCCGAGGACAGCTGGGGAGGCAGATACACAGGAGCCCCTTCGAACCACTGCCTGGCCGTCTGTGGGTCGGGTCAGGTTTACTCCTGGGGCCAAGGCTCTGAGGGGCAGCTCGGGATTGGTGGTTGCAAGAAAGGTCTTCTGAAGCCCAGAATAATTCAAGCCCTCGGGGGAATACAAATTTGTCAGGTGGTGTCTATCTCCGGAGCCCCAGTGACCCGGGTCTGTGCCGGGGCAGAGCACAGTTTCGCCATCTCACTCTCGGGGGCGGTGTACGCTTGGGGCGCCAACAACGCAGGGCAGCTGGGAATCAACAGAGTGGATGAGACAGGCAGGTTCAACCCCTGTCCTGTGGCTGCTCTGAAACTCCTCGGGGTGTCTTCTGTGAGCTGTGGCGATGCCCATACCGCAGTACTGGCTAAAGATGGGAGCGTTTACACGTTTGGCGATGGCACTTATGGCCAGCTGGGGCACAACTCCACAGCCAGAGAGCTCAGGCCCAGGAAGGTGGAGGCGATTCGAGAGAGAGCATCGCAAGTGCAGTGCGGCAGGAGCACCGAGGGTCAGACGGGCACCGGAAGTACTGCGAATCAGCTGCAGCCCAGCCCGGTGCTGCTGCCCGGGAGCTCTGAACGCGCTGACACTGCGGAGGAAGgtgatttcaactcCAGGCAGATAACGGTTTTCACTGGACACAATGCCAGTTTCATTCTAACGGGGCCTTCCAAGCACCCAACTGGCGCCGGAGGACTCCTGAAAATCGACACTCAGACTCTTCAGAAATGGCTGACTGTGGAATTTGGCAGTAAACAATGGAAAGAGGCTAAAAGGGATGTGTTTAGACAACTGCAGAAGAAACACTGGATTATTACCCAGTCTCCAGCCCCGAACGTGGAAGCCCTGGAGGTGTTCCTCATCCTGCCGGAGATCTCCGTGTTTCACGAGGAGAAGAACATCCCTGATCTCATTCTTCCCCTCTCCAGCGCCATCGCTAATCTGAGTGACGCGTCCTCCAAGATTCTCCGGACGTGGTGGACAATGCTGCCTGTGTCGCACATGAACAAAATCCTCCAAATGTTCAGACGGGTCATTTCCTGTAAGCTGAAGGGGTTAATAAAATCCATGAGAGACCATTTGCTTTTGAAAGATGTGCTGCAGAACATGAAGCTGCTGTTCAAGGCAAACAAACAGGTGAAGTTCCTTCTGCCAGTGAGCGCCTTCTACATGGACGAAGTCGTGCCCTTTGTTCCCATCGTGGTAGACATGCTCAGCTGGCGTTTCTATCAGCAGGAGGATCTGTCGACTGATGTTCACTCACCAGTTATTTTATGCCGGTTCCCCTTTGCTCTGAATCTACTCACCAAGGTTCAGATGCTGCATGTTGATGCCCAACTGAGAAACCTTGGACACATTGACTTCCACAACCCAGTGGTCATACAGAATTTAATTAGGCGGGCCCACAACCTCCCTCCCCTGCCGGTGTTCAGGCTGCAGGTGAGACGCACTCACCTCTCCGCAGACGCGCTGAGGAGGATCGACCTGGCAGAGGACAGAGACTTCAGGAAGCAGCTCATGTTCCCAGACAAACAGAACCAGGATCAAAGAGGCATTCAGAGGGAATTTTTCTGCAGGATCTGCAGCGAAATGCTTCAGCTCGAGTCGGGCATGTTCTGGCACAATGAATCCTCAACAGCGATCTGGTTCCCCACCAAGCCGTCGGTGGAGAAGAAGAGGTACTTCCTGTTTGGGATTCTCTGTGGCCTGGTTGTCTTCAACTACAACACGGTGCGCCTCCCCTTCCCTCTGGCCCTGTTTAAGAAGCTGGTGGATGATCTCCTGGACTACAGCGGTGAAGATGTAGAGGAAAGCCTGAGTCTCACCTTCTCGgtGAGCTGGGATGGCATGGAGGTGGATCTAGTGCCCGATGGCAAAAGCAAGCGGGTGAACAAATCCAACAGGAGGGAGTTTGTCAACGCCTGTGTGGACTATGTGTTCAACACGTCCGTGAGAGCCCTGTTCGAGGAGTTCAGACGGGGTTTTCTCAAAGTCTGCGATTTCGAGATCCTGAGTTTCTTCCAGCCTCAGGAGATCATGGAGGCGATGACGGGGACCACAGACTATGACTGGCACAAACTCAAGCAGAGCGCACTCTATGAGGGTGGGTACCATGCAGACCACCCTACCATTGTCACCTTCTGGAGGGTGTTTCTGGACCTGACAACGGCCCAGAAGAAGAGCTTCCTCGTGTTCCTCACAGGAAGTGACCGCATTCCCATCTTAGGGATCGATTGTTTAAAGATGACAGTCATGCCGTTGTCGTCTTCCACGGAGGAACACTTGCCGGAGGTGAACGTGTGcttcctgcagctgctgctcccTGGGTACAGCACCGAGGACACGATGAGACGCAAGCTTCTGCAGGCTCTCCCTCACAGCAGTGGCTCCTGGAAAACCTGAGCGGCGAGCAACGCCTGGCCTTCACAGTGTGCATCAAGGCTGACTCTTTGGTCCAGCTCATGTCGCACTTCCTGCAAAGtggttattttctatttctttgagagagtttttatttcagctatttttaaataagtatagCTCTTTGGCTCTTATGCAAATGTAAACGCTTTACCTTCAGGTCACCCAAGTTTGATTTTGTGACGGAAAGCAAGTTGTTCACACTGTCCTAATCACTGCAGTTTCATTTCAAAACCATTAGTGTTTGAAAACTGCTATTCATGCTTTGAATTCTGTTCAAGTCATCAGGgtacataaatgcatttttgcaaAGCTTTTCTGCAAGGTGGATGGGATTTCTCTTTAGGGGCTTTCCATCTAATctgaaatgtaatctgaaattgAAAGGGTTCTGCTACTTTTGATAACGGCTGGAAGTTCTAGAtctacactaccagtcaaaagtttttgCCAGTTTTTGTAGAAATGTACGCAGttcaatgtctcaatgtactctgaaattaaagcacagaacaattaaacaaatggaGAAATCATGGACTCTGATGTGAAAAAGTTGGGTTTTATACCCCCCTGCATTTatgccacccccacccccccatattctggaaccaggcagtctactgatcaaaacaagaccatccaggTTTTGGCAGAAgtaacacacacccgtagagagctcaacatgtccAGATGGAAAACTCCGTAACGATTTTCCATaactggatctgaacttctctgtgtttgatagaacatcaaataaataggctgaacaaaacaagcctatttccAAAGAAAccaatcgaaactgagtgatctgagATCTTCTGAAAGGCCCCCCCCCCTCAGTATATTgcgcgtttaccccccgggtatttaaaatactgaatatcAGTATGGCACACAGGAGAGCTAAAAATAGTTACCCATATCAACAGAACATGAGATTAATAGTAAATATGTTCTAGTAATGACCATACGATGGCGCTAAAACACAGCTGATGAATGCCTGACCCTGCAGAGACCCTTTTCACTCTTGGGAGCCACAGCCAGGACAGGTGACATGCGATCTGCGCTGTCGGCTTAATTTTTATTCATCTGAATAATTGGATCATTATAAAAGTCTGACGCTAGGTGGAAAAGtgtgaaaataacaaaaggaCAACATCTGTAAATATTAGGACTGAtccaaaagttattttttaaaacgaATAATTAGATTAATATGAATACGATGTTgccattttttctttcagaaatgtTACCTGGTGGGTCACCAGaacattgcattattaaaagctTATTGACAATATATTAGCTTTATCATTAACCTGTTTAGTCTGGGCATGAACTAGTTAA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126990 lncRNA upstream 16713 29705977 ~ 29728715 (+) True G101678
TU126931 lncRNA upstream 149537 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 559101 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 562559 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 568104 29174777 ~ 29177324 (+) True G101556
TU127198 lncRNA downstream 833643 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 833643 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 1505970 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 1511737 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 1912052 31673487 ~ 31674507 (+) True G101964
AMCG00015922 mRNA upstream 7696 29726374 ~ 29737732 (+) True AMCG00015922
AMCG00015919 mRNA upstream 65480 29665582 ~ 29679948 (+) True AMCG00015919
AMCG00015918 mRNA upstream 92490 29624045 ~ 29652938 (+) True AMCG00015918
AMCG00015916 mRNA upstream 166593 29572501 ~ 29578835 (+) True AMCG00015916
AMCG00015917 mRNA upstream 194331 29549604 ~ 29551097 (+) True AMCG00015917
AMCG00015928 mRNA downstream 317856 30079291 ~ 30082474 (+) True AMCG00015928
AMCG00015930 mRNA downstream 322574 30084009 ~ 30110354 (+) True AMCG00015930
AMCG00015929 mRNA downstream 374100 30135535 ~ 30154322 (+) True AMCG00015929
AMCG00015932 mRNA downstream 415815 30177250 ~ 30183373 (+) True AMCG00015932
AMCG00015931 mRNA downstream 422063 30183498 ~ 30188625 (+) True AMCG00015931
TU126954 other upstream 106647 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 1164599 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 1753414 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3367729 26373153 ~ 26377699 (+) True G101275
TU126442 other upstream 3481120 26263915 ~ 26264308 (+) True G101248
TU127075 other downstream 404593 30166028 ~ 30168289 (+) True G101752
TU127225 other downstream 1042654 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 1501026 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 1979093 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 1980799 31742234 ~ 31746116 (+) True AMCG00015959

Expression Profile