RNA id: AMCG00015931


Basic Information

Item Value
RNA id AMCG00015931
length 2011
RNA type mRNA
GC content 0.62
exon number 13
gene id AMCG00015931
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30183498 ~ 30188625 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGAAGCGGCGGAGGGACACGTGTGGGGCTGTCAGTGCCGGAGCGCACACCTGCAGCCGACTCGACACGCCGCCATGCTTCCCCTCAGAAGGGCAGCGCTGTGGGGGCTGAGGAGGGACCACAGCCGGGCACTGTCTCTGTCCCCAACACACCGGGACGCCCAGAAGGGCCTGGTCCTCGGGGTCTACGAACAGGAGCAGGAGGACGGCGGGCCGAGCTTCACCGAGTCCGCCGAGGCCTTCGACCGGTCCCTGTCCGGCGGGCTGCGGGAGCTGCTGgccgtATCTGGACCAGCTTTGAAAAGGGGGAAAAGCCGGATATTTTATGGTGTGCACAAGGATTTCCCCAGCGTGGTGCTCGTCGGTCTGGGGAAGCCCTCGGCGGGGGTGTGCGCTCAGGAGAGCTGGGATCAGCGCCGAGAGAACATCCGCGCCGCGGCGGCAGTGGGCTGCCGgcagctgcaggagctggaggtGTCTGTGGTGGAGGTGGACGCGTGCGGAGACGCCCAGGCGGCGGCGGAGGGCGCGGTGCTGGGCCTGTTCGAGTACGACGAGctgaagcagaagaagaagacggCGGTCGATGCGCGGCTCCACGGCAGCTCGGGGGCTGCGGACTGGCACCGAGGGGTGCTGTACGCCGAGGGGCAGAACCTGGCGCGCCACCTCATGGAGGCTCCTGCCAACTACGTCACGCCCACCGCCTTTGCCGAGACGATCCAGCAGAGACTGTCGCCTCTGTCCGACAAGGTCACGGTGCACATGAGACCACAGTCCTGGATAGAAGACCATCAGATGGGGGCCTTCTTGAGCGTGTCCAAGGGCTCCGAGGAGCCGCCCGTGTTCCTGGAGATCCACTACCGGGGCGGCCCCAGCGCCAGCCAGCCTCCCCTGGTGCTGGTGGGGAAAGGGGTGACCTTCGACAGCGGAGGGATCTCTCTGAAGCCGTCTTCGGGCATGGACGCCATGCGGGCGGATATGGGGGGGGCGGCGACGGTGTGCTCCGCTGTGGTCACGGCGGCGGCCCTGAACCTCCCGCTCAACATCGTGGgTTTGGCGCCGCTTTGTGAGAACATGCCCAGTGGCAAGGCGAATAAACCCGGAGACGTGGTGCGGGCGAAGAACGGGAAGACGATACAGATCGACAACACGGACGCAGAGGGGCGTCTGATACTGGCCGACGCGCTGTGCTACGCGCACAGCTTGAACCCCAGGGCTATAGTGAACGCTGCCACGCTCACAGGTGCCATGGATGTGGCCCTCGGATCTGCGGCTGCCGGCGTCTTCACCAATTCAGACTGGTTATGGGATCACCTGCAGAAGGCCGGCGCGGTGACGGGGGACAGGGTGTGGAGGATGCCTCTGTTCCAGCACTACACCAGACAGGTGACCGAGAGCCAGCTGGCCGACCTCAACAACGTCGGGAAGTACAGCCGGTCGGGGGGGGCCTGCACTGCCGCGGCGTTCCTGCGGGAGTTCGTCTCCGCCCCGCACTGGGCGCACCTGGACATCGCGGGGGTGATGTCCAACAAGGACGAGGTGCCCTACCTGCGCAAGGGCATGTCGGGACGGCCAACCAGAACGCTCGTGGAGTTCGCCGCCGGCCTGAGCAGAGAGGTGTAGAGGTTGCATTCCTCAGAGGCGGCGGCTGAAGACCCCGCGTGGgcttttgtaaactttttccAGTCTGTATCAtggatgtattttgtatgacGCATGACTTGGGAGTGTTTGTGAGTGAAGTGTTCAAGCGAAGACGGCGGGGTTTGTCATCTTGTGGATAGAGGCAGTAATTGCAGAACGCTAATAAAATTAACCTGTAAATGGACAATATGCCGactcattcaaatgtatttattttctactgaCTTAAGCCCAATTCGGACGGTTTGAAAGAGCACTTGCACCCGTTGATCCAATTACACTTTCAATGCACATCTACAGTAATTGCTTAAACCACTCGATCCCATGCAGACTGGTGGATGGGGTATAAGACGGGGCACAGCGG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0008235 metalloexopeptidase activity molecular_function

KEGG:

id description
K11142 LAP3; cytosol aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126990 lncRNA upstream 454783 29705977 ~ 29728715 (+) True G101678
TU126931 lncRNA upstream 587607 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 997171 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 1000629 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 1006174 29174777 ~ 29177324 (+) True G101556
TU127198 lncRNA downstream 406453 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 406453 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 1078780 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 1084547 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 1484862 31673487 ~ 31674507 (+) True G101964
AMCG00015932 mRNA upstream 125 30177250 ~ 30183373 (+) True AMCG00015932
AMCG00015929 mRNA upstream 29176 30135535 ~ 30154322 (+) True AMCG00015929
AMCG00015930 mRNA upstream 73144 30084009 ~ 30110354 (+) True AMCG00015930
AMCG00015928 mRNA upstream 101024 30079291 ~ 30082474 (+) True AMCG00015928
AMCG00015921 mRNA upstream 422063 29745428 ~ 29761435 (+) True AMCG00015921
AMCG00015940 mRNA downstream 108843 30297468 ~ 30309313 (+) True AMCG00015940
AMCG00015937 mRNA downstream 132885 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015938 mRNA downstream 157808 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015941 mRNA downstream 178595 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015949 mRNA downstream 776091 30964716 ~ 30970883 (+) True AMCG00015949
TU127075 other upstream 15209 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 544717 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 1602669 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 2191484 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3805799 26373153 ~ 26377699 (+) True G101275
TU127225 other downstream 615464 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 1073836 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 1551903 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 1553609 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 1759850 31948475 ~ 31951870 (+) True AMCG00015966

Expression Profile