RNA id: AMCG00015938



Basic Information


Item Value
RNA id AMCG00015938
length 503
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00015938
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30346433 ~ 30349433 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCCGTGTTCTCTGAGCGCACCTGCCTACGTCACAGTGGTCCGCTGTTACACTGTTACGCTCAGTCTCATGAAAGCATTCGAAGAAGTTTATTGTACACTGTCCCTGTGAAGAAATGGCTTCCAGTAACAAACCATCAATAAAGCAGAGACTGCAGAAGGCGTCCTGTTGGATTCACAACAAACTCTGTAAAGTGGAAAcggtggaggaagaggaggggagacAGGATTTCCACATCCCGAGCTGGGACTCTACCAACTTGACTGACTTGTCCGACTGCCCGGCACTGCCCTCGCCCCTGGCTTTAGCCTGCCGCCGCATGTCGGTCTTCACAGCCTGGGAATCGAGGAAGCCCTGCAGGTCCGGGTGGTGGAAGGAGGCCTGGGAGCCGCAATGGGACATGCACTCCGACGGCGCCCTCTCTGACCCCTGCTCGGAAGTGCTGACCGCCCACTCTGCCTCTAGGGACTCGACGCTGGTGTCCAGCTCCTCCACAGAGACCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126990 lncRNA upstream 617718 29705977 ~ 29728715 (+) True G101678
TU126931 lncRNA upstream 750542 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 1160106 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 1163564 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 1169109 29174777 ~ 29177324 (+) True G101556
TU127198 lncRNA downstream 245645 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 245645 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 917972 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 923739 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 1324054 31673487 ~ 31674507 (+) True G101964
AMCG00015937 mRNA upstream 10164 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015940 mRNA upstream 37120 30297468 ~ 30309313 (+) True AMCG00015940
AMCG00015931 mRNA upstream 157808 30183498 ~ 30188625 (+) True AMCG00015931
AMCG00015932 mRNA upstream 163060 30177250 ~ 30183373 (+) True AMCG00015932
AMCG00015929 mRNA upstream 192111 30135535 ~ 30154322 (+) True AMCG00015929
AMCG00015941 mRNA downstream 17787 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015949 mRNA downstream 615283 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015953 mRNA downstream 855141 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015959 mRNA downstream 1384334 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015966 mRNA downstream 1600274 31949707 ~ 31951813 (+) False AMCG00015966
TU127075 other upstream 178144 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 707652 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 1765604 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 2354419 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3968734 26373153 ~ 26377699 (+) True G101275
TU127225 other downstream 454656 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 913028 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 1391095 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 1392801 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 1599042 31948475 ~ 31951870 (+) True AMCG00015966

Expression Profile