RNA id: AMCG00015941


Basic Information

Item Value
RNA id AMCG00015941
length 2665
RNA type mRNA
GC content 0.65
exon number 13
gene id AMCG00015941
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30367220 ~ 30390587 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTTTTTACCAAGTGCGGTCTTCTGCGCTGTGGCGGCatcgcaaacacacacacacacacacacatgcataccaGCGGCGTTTTATTCGGTGAAGAGGTAGCCTGTTTCATCATTTAACTGTAGTTACCCGGGCTTATAAACCTATTCACTGttactagtagtagtaagaGGTGGGCGCAACAAAAGCACAACCACATCACCCTCTTTACCGCAAAGGAAATTTGTGTCTCCTGGGACTGTCCCACTCACTGGGTCCAGCGGAGGCGGAGGTCGGGGGGACGGGGTTATGAAGGCTCTTCGCCCCAGGACCCCAGGTTGTGTGTTTGCGGCTTGAGGGCGGATGGACAGCATGCTCTGGACCCGGCTCTTTGTGCTGCGGCTTGCCTGCTCCGCTCTGGCCGGGCTGCAGGGCTCCCTCGGCGGCGGCGGCGCCTCCTCCTTCACCGACTGCATCCAGAGCCGGGGCCGGTCCGGCTACTACCAGGGCTGGATCGATGTCACCGAGTCCGGGGGGAAGTGCCTGAACTGGACGGACATCGCCGGCTTTGTTGAGAGGCACCCCGGGAGAGGGCTGGGGGGACACAACTTGTGCAGAAACCCGGACGGCAGGATCCGACCCTGGTGTTACTTCAGGAACAGCCGAGGCAGGACAGACTGGGGCTACTGCGACTGCAAGCAAGGCTCGGTGCGGCTGCAGGGGGGCCGGTCCAAACTGGAGGGGACGGTTGAGGTCTACTTGAACGGGGTGTGGGGGACGGTCTGCAGTAACGGCTGGGAGGACGAGGATGCGGCCGTGGCGTGCCGACAGCTGGGATACGGGTACAAAGGCCAGGCCCGGCAGACGGCGCTGTCCCGGCTCAGTCTGGCGCCAACACACTGGCGCGCAGTGCACTGCCACGGCCACGAGACGGAGCTGCTGGAGTGCCAGAGGACTGCGTGGAACGGGGGGGTGTGTGCCAACCGGCAGGCCGCGGCGGTGGTATGCACCCCTCAGGAAGAGGCTGTGTTTGTTCCAGTGCGCCTGGCGGGGGGCAGCTCTGAGCATGAGGGCCGCGTGGAAGTGTATCACTCCGGGCAGTGGGGCACGGTGTGCGACGACCAGTGGGACGACTCCGATGCCGAGGTGGTGTGCCGGCAGCTGGGACTAGGGGGGGTGGCGAAGGCGTGGAGCCAGGCGTATTTCGGCGAGGGCTCGGGCCGGGTGTGGCTGGACGAGGTGCGCTGCACGGGCAACGAGCTCTCGCTGGAGCAGTGCGCCAAGAGCCTCTGGGGGGAGCACAACTGCGAGCATCGGGAGGACGCCGGGGTGTCCTGCACTCCTCTCACAGATGGCTCCATGCGCCTGGTGGGCGGACAAGGCAGCTACGAGGGCCGTCTGGAGGTCCACTACAAGGGCCTGTGGGGCACGGTCTGCGACGACGGCTGGACGGAGTCGAACACTCAAGTGGTCTGCAGACAGCTGGGATTTCGGTACAGTCCGGGAGCCACGCAGCCCCGCCCCACGCCCGGCTCGGGCCCGATCCACCTGGACGACGTGAGCTGCTCTGGGAAGGAGGCGTCACTCCCTCTGTGCGTCAGGAGGGAGTGGAGGAAGCACGACTGCACCCACCAGGAGGATGTGTCTGTGTCCTGCAGCCCGGAGCGCGTGGTCCACGGACTCCCCCCCAGCCTGCCCATCCGGCTGATGGATGGGGAGAACAAGAAGGAGGGACGGGTGGAGGTGTATATCAGTGGCCAGTGGGGGACGATTTGTGACGACGGATGGACGGACCGGGACGCCGAGGTGGTCTGCAGGCAGCTCGGCCACGCGGGCTCAGCTAAGGCTAGGACAATGGCCTACTTCGGGGAAGGGCAAGGTCCCATCCACGTGGATAACTTGAAGTGCACGGGCAATGAGAGAGCGCTGGCCGACTGCATCAAGCAGCCGGTGGGGACGCACAACTGCCGGCACAGCGAGGACGCCGGCGTCATCTGCGACTACGGGGAGCGCACGACTGCGAGGAACATGAAGGGAGACCCGATCGCGTCTGTGTGTGGGCTGCGCTTAGTACACACCCGCCAGAAGAGGATAATCGGGGGGGAGAATTCCTTAAGGTACGGCAACGACACCAAGACGTACAAGGTGCGGGTGGGCGACTACCACACGCTGGTCCCGGAGGAGTACGAGGCCGAGTACGGGGTCGACGCCATCGTCCCGCACGGCAACTACAGGCCAGACAGCAACGACTACGACCTGGCGTTGGTGCGGCtggcggggcggggggggcagtGCGTGTCCTTCGGCCGCCACGTCCTGCCCGCCTGCCTGCCCCAGCGCCGGGAGAAGGTCCTGAAGGTGGCGTCCAACTGCTTCATCACAGGCTGGGGGGACACGGGAAGGGAGGCGCCCGTCTCCCTGCTCCACCGGAGGCACTGCGAGGAGAGCTACTCGGAGCAGTTCACCGGGAGGATGCTGTGCGCCGGCAGCGCCCCGGCGGGGAGGTGGGTGGACAGCTGCCGCGGCGACAGCGGGGGCCCCCTGGTGTGCGAGAGGCCGGGTGGCGGGTGGGTGCTGTACGGGGTCACGTCGTGGGGACACGCATGCCGCCTGCGGAACTCACCGGGCGTCTACACGAAAGTGTCGGCCTTCCTGCCCTGGATCAAGCGAGTGACCGAGCTCTGA

Function

GO:

id name namespace
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K09624 PRSS12; neurotrypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126990 lncRNA upstream 638505 29705977 ~ 29728715 (+) True G101678
TU126931 lncRNA upstream 771329 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 1180893 29186105 ~ 29186327 (+) True G101560
TU126836 lncRNA upstream 1184351 29182531 ~ 29182869 (+) True G101558
TU126834 lncRNA upstream 1189896 29174777 ~ 29177324 (+) True G101556
TU127198 lncRNA downstream 204491 30595078 ~ 30597798 (+) True G101848
TU127199 lncRNA downstream 204491 30595078 ~ 30641350 (+) False G101848
TU127300 lncRNA downstream 876818 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 882585 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 1282900 31673487 ~ 31674507 (+) True G101964
AMCG00015938 mRNA upstream 17787 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015937 mRNA upstream 30951 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015940 mRNA upstream 57907 30297468 ~ 30309313 (+) True AMCG00015940
AMCG00015931 mRNA upstream 178595 30183498 ~ 30188625 (+) True AMCG00015931
AMCG00015932 mRNA upstream 183847 30177250 ~ 30183373 (+) True AMCG00015932
AMCG00015949 mRNA downstream 574129 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015953 mRNA downstream 813987 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015959 mRNA downstream 1343180 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015966 mRNA downstream 1559120 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015964 mRNA downstream 1593382 31983969 ~ 31986525 (+) True AMCG00015964
TU127075 other upstream 198931 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 728439 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 1786391 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 2375206 27890552 ~ 27992014 (+) False G101400
TU126474 other upstream 3989521 26373153 ~ 26377699 (+) True G101275
TU127225 other downstream 413502 30804089 ~ 30809238 (+) True G101870
TU127298 other downstream 871874 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 1349941 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 1351647 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 1557888 31948475 ~ 31951870 (+) True AMCG00015966

Expression Profile