RNA id: AMCG00015949


Basic Information

Item Value
RNA id AMCG00015949
length 2883
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00015949
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 30964716 ~ 30970883 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGTGTGCAGCGACCTGGAGCTCCGGGAAGTGGTCAGCAGACTGAAAGACTGGTTCAAGGTGCTGCACGAGAACGGAAACCAGAACAAAAAGATGAAGATACAGAGGCCAGAGAGAAGCCGGTTTGATACGAGTATTCTGCCGATTTGCAAGGACTCTCTGGGCTGGATGTTTAACAGGCTAGACACGAACTATGACCTCCTGCTGGACCAGTCGGAGCTGTCCAGCCTGTATCTGGACAAGAACGAGCTGTGCACCAAGTCGTTCTTCAACTCCTGCGACACCTACAGAGACGGCTTGATCTCCAATAACGAATGGTGCTCCTGCTTTCAGAGACAACAAGACCCTCCCTGCCAGACAGAACTGACCAATATCCAGAGCCAGCAAGCGGGAAAGAAACTCCTGGGGTTATATATACCGTCCTGTGACGAGGACGGATATTACAAACCCACGCAGTGTCACGGCAGCAGCGGCCAGTGTTGGTGTGTCGACAGATACGGGAACGAAGTCGTGGGATCCAGGATGCACGGGGCTTCGGACTGTGGTGTGGAGCTGGAGTCTTCCGGCGACTTCGGCAGCGGCTATTTCCAAGTGTCGGACGACGAGGACGGGGTGGAGGGAGTCCTCATTGACGAGGACGAGATCGACGACGATGACGAGGACGAGGgtgacgacgacgacgacgaggGATACATCTCGTAGTCGCCGCGCTCTCACAAACTCCTCTCCGTCTCAGATTGCACGTTTTCTAAGGTGACAACCCATGCAGATTACTTCCTGTACCATACTAACAACCCACGGATTCAACTCAGcgtgtatattttgtataatgtaacCTCAGATATATCCACTGAATACAtgggagtttttatttttgatttcttagTCCTACCCCTGAACCCCACCCTCCCCCATTTCTTTAGGAAATGATCAATCTTTACATGTAGTTGTGTGTTAGGAGTTGCTTCAACAGACAATTCAAACAACCAAATGAAGACGACACCTTTGACATGGAAATCAGAGGAAACAAAcagtaacaaacacacacatacagcgaacaacaaacaaacagtgacGACAGTAGCTCTATCGGCAGCCTTGACTAACCCCGTCGTGACGCAGTGACGCAGTGATGCAGTGCTTTGTGTTGACTAGAGTCGCCCACTGACGCATACACTTAGGAGACGGCTCTATAGGAGGAAGGGTCATCTCTTTCCTGCACTAATCTCAGCATCTTAAAGAGGACTTTCGAGTACTTCTCGacattttctgaacattttcgACACTCTTCTCCCTATTCCAGCAGTCCAGCCCTCTCCAGAGCGCTGCAATTAGTGGTAATCATCCATAGCATGATAGAAGTCACTCCATCATATACGATGCAGTTTTTATTCATTGCATTGATGacgatttctttcttttcttcctgtCCTTGTTGTCCGCACAACGTACATGGGGACTGTCTGTACCGTAGTAAAGATTTTTCTATAGaaattatacacaaaaacatatatacaaaaaaaagataacatttcTAAGAAGTATCTAGACAAAGCAAGGTTTTatgtgtttaaattgaaaagtGTGTCCGAGTTGCAAGcagtctttttttctctcagatTTATATTTGCAACAGTGTTCGACCTTTTCAGtcagtttattattgttgttattatttggaAAGCATAATGTTGTCCCTCGCCAACAATTGCGTAGAATGTACTGTTATTAAACATGTAATCGTAATAATAGTAGAGGGGGGACATCGGTGTCCCTGTCCTAAGCGAGAGGACACTACGGATTCCTCCCTTATAAAGGACAGAAGATGTGTGTGCCATGGTGTACGATACATCTTAAACAAACTGCCGCTTCCTGTCCGATTGATCAGTCAAGtgcgaatatatatatacacacacatgtatgatGCTGACAGGTTCCCACCCTTAATATTGACTCTTAACACCCTCAGAAAGATCATTATGCCCAACCTAAACATGGACTCTGAGTAAAGATCTTTTTAATCATTAGTGTTGAGGGATATAAATGTGACAACAGTTTAATTTGACCCGTGATAGGTgctaaaacacacagacacagctctgCGCACCTCTAAATATTCAGCACCTTTTCACCTTTTCAAGAAAAAGAGTCTCAGACCCATTGTTGTCGGCCGTGCCTCAGGGATGGAGGCGTGGCGGGACGCTCTGTCGCCGCGCTCTCGGACAACACCGCCCCGATTATTCTGTCGGTTAGACACAGCTGACATTATGTTACTTCAAGATCTTGTCCAGTTCATGGCTGACCAGATGTAACCGCCTATAGCATCGTCCTCGGTCCATGACTGGGAGCCGGTGGGTCGGAGCAAAGGCTTGTGTGAGACCCCTGCTTTGTAAGAGTAGAGTTTAGACCGTAGAAAAGCACAGACATTgtgttttcagctttttttaaaggtatttacTGCTGCtggaatttttgttttgttttgtttgttttcttctgtcgTTTTGTTCATAAAACACATGGTCTGTGTCATACGATTCTCATGTAGCATAACGACTGATGATGTACCTGTAGAGGACATTATTTTAATCGCAGTTATTTGACATTTGACCAGCATGTTGACAGACGTGTGAGCGTGGGATTCCCGTGACAGGCCCCTGCGGCCCTCGTGTGCTGTGAACGAGTCCGCTTGTGTTCAGTCATTTGCACAATTGGCTTCAACATCAAATGAATCTTGATCTGGATTGTTTTTTctctatattttttctttttgcatttaaaaaaatgataatcattatctttttcagtttaaatattgtttaaaaaaatgcattttttacaatgtatgtataatttgcagaaataaaaattatgTTAGCCAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127199 lncRNA upstream 323366 30595078 ~ 30641350 (+) False G101848
TU127198 lncRNA upstream 366918 30595078 ~ 30597798 (+) True G101848
TU126990 lncRNA upstream 1236001 29705977 ~ 29728715 (+) True G101678
TU126931 lncRNA upstream 1368825 29578529 ~ 29595891 (+) True G101638
TU126838 lncRNA upstream 1778389 29186105 ~ 29186327 (+) True G101560
TU127300 lncRNA downstream 296522 31267405 ~ 31287766 (+) False G101930
TU127307 lncRNA downstream 302289 31273172 ~ 31316692 (+) True G101935
TU127349 lncRNA downstream 702604 31673487 ~ 31674507 (+) True G101964
TU127350 lncRNA downstream 707829 31678712 ~ 31679106 (+) True G101965
TU127351 lncRNA downstream 712182 31683065 ~ 31683412 (+) True G101966
AMCG00015941 mRNA upstream 574129 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015938 mRNA upstream 615283 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015937 mRNA upstream 628447 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015940 mRNA upstream 655403 30297468 ~ 30309313 (+) True AMCG00015940
AMCG00015931 mRNA upstream 776091 30183498 ~ 30188625 (+) True AMCG00015931
AMCG00015953 mRNA downstream 233691 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015959 mRNA downstream 762884 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015966 mRNA downstream 978824 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015964 mRNA downstream 1013086 31983969 ~ 31986525 (+) True AMCG00015964
AMCG00015967 mRNA downstream 1023698 31994581 ~ 31995965 (+) False AMCG00015967
TU127225 other upstream 155478 30804089 ~ 30809238 (+) True G101870
TU127075 other upstream 796427 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 1325935 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 2383887 28577500 ~ 28580829 (+) True AMCG00015901
TU126639 other upstream 2972702 27890552 ~ 27992014 (+) False G101400
TU127298 other downstream 291578 31262461 ~ 31287766 (+) True G101930
TU127369 other downstream 769645 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other downstream 771351 31742234 ~ 31746116 (+) True AMCG00015959
TU127412 other downstream 977592 31948475 ~ 31951870 (+) True AMCG00015966
TU127466 other downstream 1193313 32164196 ~ 32171075 (+) True G102064

Expression Profile