RNA id: AMCG00015959



Basic Information


Item Value
RNA id AMCG00015959
length 747
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00015959
representative False

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31733767 ~ 31746116 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGTCCAACCACAGGAACCCACACAATGAACAAGCCGCTGCGTGCGGTCCGAGCGCCGGAACCCGAAGTCAGAGCAGCGGAGACCCGGGACACGAACACGGGCGCGCCGACTTCCGCTTCCGCTGCGCCGACTTCCGCTTCCGCTGCGCCGACTTCCGCTTCCGCTGCGCCGGCCGAGCACACGTGGGCAGCGCTAAGAACATGGCTGCCAGTATTGTGTCCGAGACCTTTTTTGCACTGTTGTTACACAGGACTGAAAAGGCGTTGCGTCTCAACGCTATAGGTGAGAAACTCCTTTGGTTTCAAAGTCAACTGGATCCGAACAAGAGCGAATACACAAAGGCGGATGTGTGTGAACTCGTAGAAAGGTACCTGCGCCGGTTCGATGGGGAGCTGGAGCAGATCGCGCTGGTGAACGGCATCCGGGGCAGGCAGGGCCGGCAGCACGGCTCCCGGGAGAGCGCCCTGAAGCAGGCGGCCGAGCGCGAGAGGACGCAGTACGAGGGATACGGCATGGAAATCCCCGATCTCATCAACAGCAAGCATCTGAAGACGTTCAGGGAGTGGAGTGGAGACCTGAAGAAGCTGCCGAACATCAAGATGCGCCGGGTGTCGGCGAAGGCGGGGGAGAGCgagcagagagaggcagaggagggCGAGGCAGCCGGGGTGCGGGACGACAATGACGACGACATGTCGGCCGAGGACTCTGACCCCGAGTCCCAGGAGGACGAGGAGCTGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU127356 lncRNA upstream 16446 31716454 ~ 31717321 (+) True G101970
TU127355 lncRNA upstream 26474 31706806 ~ 31707293 (+) True G101969
TU127351 lncRNA upstream 50355 31683065 ~ 31683412 (+) True G101966
TU127350 lncRNA upstream 54661 31678712 ~ 31679106 (+) True G101965
TU127349 lncRNA upstream 59260 31673487 ~ 31674507 (+) True G101964
TU127389 lncRNA downstream 83507 31828190 ~ 31828574 (+) True G101997
TU127431 lncRNA downstream 249447 31994130 ~ 31996026 (+) False AMCG00015967
TU127433 lncRNA downstream 249447 31994130 ~ 31996026 (+) True AMCG00015967
TU127443 lncRNA downstream 321153 32065836 ~ 32067452 (+) True G102043
TU127633 lncRNA downstream 974407 32719090 ~ 32723878 (+) False G102193
AMCG00015953 mRNA upstream 517670 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015949 mRNA upstream 762884 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015941 mRNA upstream 1343180 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015938 mRNA upstream 1384334 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015937 mRNA upstream 1397498 30321510 ~ 30336269 (+) True AMCG00015937
AMCG00015966 mRNA downstream 205024 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015964 mRNA downstream 239286 31983969 ~ 31986525 (+) True AMCG00015964
AMCG00015967 mRNA downstream 249898 31994581 ~ 31995965 (+) False AMCG00015967
AMCG00015968 mRNA downstream 329570 32074253 ~ 32075287 (+) True AMCG00015968
AMCG00015969 mRNA downstream 333875 32078558 ~ 32080626 (+) True AMCG00015969
TU127298 other upstream 446001 31262461 ~ 31287766 (+) True G101930
TU127225 other upstream 924529 30804089 ~ 30809238 (+) True G101870
TU127075 other upstream 1565478 30166028 ~ 30168289 (+) True G101752
TU126954 other upstream 2094986 29633438 ~ 29638781 (+) False AMCG00015918
TU126748 other upstream 3152938 28577500 ~ 28580829 (+) True AMCG00015901
TU127412 other downstream 203792 31948475 ~ 31951870 (+) True AMCG00015966
TU127466 other downstream 419513 32164196 ~ 32171075 (+) True G102064
TU127514 other downstream 637566 32382249 ~ 32397410 (+) True AMCG00015981
TU127648 other downstream 1035430 32780113 ~ 32781716 (+) True G102201
TU127749 other downstream 1162816 32907499 ~ 32909553 (+) True G102286

Expression Profile