RNA id: AMCG00015966


Basic Information

Item Value
RNA id AMCG00015966
length 333
RNA type mRNA
GC content 0.69
exon number 3
gene id AMCG00015966
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31948475 ~ 31951870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAAGTCCAGATGGCGTGCAGGACTACAGACCCCGGGCAGTGGACTTCCCTCACTATATAGGAGAGGGCAGCCTGTCTGGGGAGCGCACCAGTGACCTGAGCTACCTGCAGAGGGCCGCCCCAGGAACCCCGGCCCCCGGGGCCAAGCACGACTACGTGGGCGGGGTGGGCTGGGGGGTGATGGAGCACAGCGACCGAGGGGATCCCGGGGGAGACTGGCCTGGACACAGCACGGGTCTGAAGACCAGCCCAGACAGAGCCCAGAGCGCCGGCGCTGCAGGGAGACCCCGACCCAGCACTGCCTCGCCCGGCCCAGCGCAGTGGGACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127389 lncRNA upstream 121133 31828190 ~ 31828574 (+) True G101997
TU127365 lncRNA upstream 214753 31734174 ~ 31734954 (+) True G101979
TU127356 lncRNA upstream 232386 31716454 ~ 31717321 (+) True G101970
TU127355 lncRNA upstream 242414 31706806 ~ 31707293 (+) True G101969
TU127351 lncRNA upstream 266295 31683065 ~ 31683412 (+) True G101966
TU127431 lncRNA downstream 42317 31994130 ~ 31996026 (+) False AMCG00015967
TU127433 lncRNA downstream 42317 31994130 ~ 31996026 (+) True AMCG00015967
TU127443 lncRNA downstream 114023 32065836 ~ 32067452 (+) True G102043
TU127633 lncRNA downstream 767277 32719090 ~ 32723878 (+) False G102193
TU127636 lncRNA downstream 767277 32719090 ~ 32723878 (+) True G102193
AMCG00015959 mRNA upstream 205024 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015953 mRNA upstream 733610 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015949 mRNA upstream 978824 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015941 mRNA upstream 1559120 30367220 ~ 30390587 (+) True AMCG00015941
AMCG00015938 mRNA upstream 1600274 30346433 ~ 30349433 (+) True AMCG00015938
AMCG00015964 mRNA downstream 32156 31983969 ~ 31986525 (+) True AMCG00015964
AMCG00015967 mRNA downstream 42768 31994581 ~ 31995965 (+) False AMCG00015967
AMCG00015968 mRNA downstream 122440 32074253 ~ 32075287 (+) True AMCG00015968
AMCG00015969 mRNA downstream 126745 32078558 ~ 32080626 (+) True AMCG00015969
AMCG00015978 mRNA downstream 331626 32283439 ~ 32289880 (+) True AMCG00015978
TU127369 other upstream 203591 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other upstream 203591 31742234 ~ 31746116 (+) True AMCG00015959
TU127298 other upstream 661941 31262461 ~ 31287766 (+) True G101930
TU127225 other upstream 1140469 30804089 ~ 30809238 (+) True G101870
TU127075 other upstream 1781418 30166028 ~ 30168289 (+) True G101752
TU127466 other downstream 212383 32164196 ~ 32171075 (+) True G102064
TU127514 other downstream 430436 32382249 ~ 32397410 (+) True AMCG00015981
TU127648 other downstream 828300 32780113 ~ 32781716 (+) True G102201
TU127749 other downstream 955686 32907499 ~ 32909553 (+) True G102286