RNA id: TU127431


Basic Information

Item Value
RNA id TU127431
length 1379
lncRNA type sense_over
GC content 0.50
exon number 3
gene id AMCG00015967
representative False

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 31994130 ~ 31996026 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGCGGCGTGTACAGCCGGGCAGCGCACTCGCACAGCAGGAAACACACAGTACCTTGCAGCGAGTATCTGGCAGCCGGGAACATGTTGCGTGAAAATGCGAAGCTGCTTCCCTGGGTTTTCTTTACTTCCTATGTAACAACACTTGCGATGACCATCCAGAAGCCCGATGTGctcaaatgcaaacacacatgaATATCGGGATCCCTGCTGGCCCTGGCGTCCGCAGCTCTGGACCGCGACTACAGACTGAACTCCCAGCGCTGCAGAGCTAACCTTCACAACATCGGCCCAGAGGATCTCTGGGAAGTGCAGTTTGCGGACAGCAGTTCCCGTGCTTCCGTGTCCAGCCAAAGACTACATCTACCATCATGCATTGCGCCTTCCGCGGCACCACCGGCCACCTATGCGCATGACGTCACCAAGGGGCCAGCTGGTATACAGGGAGCAACGCGGGACTTTTTAAAAACAGGGTTTCTGTGAAGTGTTTAATGTCCGCAATGTCTGCCGACGCGCCCAGCCGCCTGCACAGCATCCTCGACCTCAGCGACCCCGCGGAGATGGTGGAGGAGATCGAGGCGCAGATCGATGACGCTGCCGTGTCCTTAACCCGAGTCCTGGAGGAGACATCCGCGATCTCCCTGCAAGTCAGAGAGCTGGCGGCCAAATGCTCCGCCAACGCGCAGTTCCTGAAGGCCTGGCGGGATCTGCTGAAGGATGGACACGCCGCCCTGCGACCGCAGCACTGACCGGGACCCGTACAGTGGACCCGGGCTGCGGTTACATCAACAATTATCGGTTACTCATCGGATACTCATCGGATACTGACACTCGAAACAACGTGGACATCTGCATAGTCAGCCTGCAGTTCTCACAAAAACagctaaaaatatattgttggaCAAGCGAAGGCAGGGAAATGCGGTGAAAGCGGCATCATATTCCTTCTCACAACCTTCAATCCTCCCCTTTGCCTTTTGCCAGTTAAAATGCTTATAGCAAGAAcagtgtggttgtgtgtttaTAATGCATACACGATATGCACAAAAACAATGCTAAAGGGAGGGGAAAAATGAAAGATTTCCACACAGATTATacaaatagttttattaaatgaacatcctgtatgtaaaaaaactcaaacaacCCTCAATTGTGCCATAATTTCAACCCTCTTTTTCTGTACACGATTCTcactttctttccctctcttatTGACTGTTTTTAAGACAATAACACAAGTCTCAATGTCATGTCACTGTTCATGTGTCTGCATTCTCCTCAATGTCTAATAATGAAGCAAATGTGTATAATGCGAACGAGTGACGTGTGCGAAATCCTTTCAATACATGCAGCCGGGCTGGGACTTACACTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127389 lncRNA upstream 165556 31828190 ~ 31828574 (+) True G101997
TU127365 lncRNA upstream 259176 31734174 ~ 31734954 (+) True G101979
TU127356 lncRNA upstream 276809 31716454 ~ 31717321 (+) True G101970
TU127355 lncRNA upstream 286837 31706806 ~ 31707293 (+) True G101969
TU127351 lncRNA upstream 310718 31683065 ~ 31683412 (+) True G101966
TU127443 lncRNA downstream 69810 32065836 ~ 32067452 (+) True G102043
TU127633 lncRNA downstream 723064 32719090 ~ 32723878 (+) False G102193
TU127636 lncRNA downstream 723064 32719090 ~ 32723878 (+) True G102193
TU127651 lncRNA downstream 786690 32782716 ~ 32791133 (+) True G102202
TU127653 lncRNA downstream 800032 32796058 ~ 32796335 (+) True G102203
AMCG00015964 mRNA upstream 7605 31983969 ~ 31986525 (+) True AMCG00015964
AMCG00015966 mRNA upstream 42317 31949707 ~ 31951813 (+) False AMCG00015966
AMCG00015959 mRNA upstream 249447 31733767 ~ 31744683 (+) False AMCG00015959
AMCG00015953 mRNA upstream 778033 31204574 ~ 31216097 (+) True AMCG00015953
AMCG00015949 mRNA upstream 1023247 30964716 ~ 30970883 (+) True AMCG00015949
AMCG00015968 mRNA downstream 78227 32074253 ~ 32075287 (+) True AMCG00015968
AMCG00015969 mRNA downstream 82532 32078558 ~ 32080626 (+) True AMCG00015969
AMCG00015978 mRNA downstream 287413 32283439 ~ 32289880 (+) True AMCG00015978
AMCG00015977 mRNA downstream 307954 32303980 ~ 32314500 (+) True AMCG00015977
AMCG00015981 mRNA downstream 397748 32393774 ~ 32397134 (+) False AMCG00015981
TU127412 other upstream 42260 31948475 ~ 31951870 (+) True AMCG00015966
TU127369 other upstream 248014 31740528 ~ 31746116 (+) False AMCG00015959
TU127368 other upstream 248014 31742234 ~ 31746116 (+) True AMCG00015959
TU127298 other upstream 706364 31262461 ~ 31287766 (+) True G101930
TU127225 other upstream 1184892 30804089 ~ 30809238 (+) True G101870
TU127466 other downstream 168170 32164196 ~ 32171075 (+) True G102064
TU127514 other downstream 386223 32382249 ~ 32397410 (+) True AMCG00015981
TU127648 other downstream 784087 32780113 ~ 32781716 (+) True G102201
TU127749 other downstream 911473 32907499 ~ 32909553 (+) True G102286

Expression Profile