RNA id: AMCG00015993


Basic Information

Item Value
RNA id AMCG00015993
length 2379
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00015993
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32587833 ~ 32590211 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGTCACTCGCTGCGGCTCTGCTGCTCCTGGCCCAGTGCCTCCTCGGTCCCCCCAGCGTGAGCGGCAGGCCGACGTGTCAGCGATGTGACGAGCACAAGGTGTGCGACTGCTCTGAGCAGAAACTCCTGCAGATGCCTGCCCTTCCCATAGCGGACGTGCTGGGCCTCAATGTTTCCTACAACTACATTGAAGCGATCTCAGAATTGGACTGCAGGTCTTTCTTGCAGCTCAGAGCGCTGAGCTTGCAGGGCAACAGGATTCACTCCATCCATGAGCGAGCTTTCACAAGCCTCGCGAACCTGCAGAGCCTGGACTTGTCCTACAACCAGCTGAGCGATTTGTCTCCGTCTTGGTTCTTCGAGCTTTCGTTACTGCAGCACCTCAACCTGCTGGGCAACACCTACCAAACTCTGGGGCAGGGTCTGCTCTTCCTGCCCCTGGCGAGCTTGAGAAGCCTGCAGTTTGGAGGCCCGGCGTTCCAGGCCGTGGGTGGCCATGACTTCGATGGGATCCAGCAGCTGGGTGATCTGGTGATGGATGGCAATGAGTTGCTTCGGTATGAAGAAGGCAGCTTTGGCTACCTACGGAGCCTGGACTCTGCCACGGTGAGTCTGCGTGGCCCGTTTGTGCGGGACCACAATCTCACATCCTGCGTTCTCCGGGATCTGTCCAGCAGCAAGACACACCTGACCCTCACCGACTTGAAACTGACTGACGCAGAGTCCATGCGGCCGCTTGGGGAATTTGGACGGAGAGGCGGGGAGATGCTGACATTTAGGAACGTGTCCATGACAGACGAGGCCGTGGTGACCTTTATCTTGCTCCTGGGGACATCAAGGCTGACCTACCTGGGGGTGGAAGACTCCCAGCTTGCAGGACACGGCCAGTGGAGTAAAGCCAAGCTGGTTCAGCCCAAGTATCTGCACACTCTTTTCATCAGAAATATACAGATCCTGGATTTCTATGCCTTCAGTTCTCTGACTTATTTCCAGAACCTTCTGAATGCCACCACAAGAGTGACCATCATCAACAGCAAAGTCTTCCTCATCCCCTGCAACACGTCTCGCAATTTTCGACATGTGGAGTTTCTGGACCTCAGTGACAACCTGCTCACTGACAGTGCCATGAAGGAGTCGGCCTGCCACGGAGATGGGGTGTGGAGAGAGCTTCAGGTCCTGAACTTGACCAAGAACTCGCTGAGGTCTATCGGCCCATTAAGCCAGCTGTTCACCAGACTGGTCAAGCTCACCTGCCTGCAGCTCAgtctcaatttattttctgagatGCCTCGGGAATGTCACTGGCCTCCTAACCTCCAAACCTTAAACCTGTCCTCCTGTCAGATACGCACATTAACGCCTTGCGTCCCAAAGAGCTTGCATGTCCTGGATCTGAGCAACAACGCTCTGTCCGTCTTCTCCGTCACACTGCCTCTCCTGACCGAGCTCCGCCTCTCGGGCAACAAGTTCGTCACCCTGCCTGAGGCGCGGCTGCTGCCCAGCCTGGCAATGCTGTCCCTGAGGGGCAACAAGCTCATCCGGCTGACCAAGAGCGGGCTCCAGGCCCACCGCAAGCTGACCACCCTGGAGGCTGGTGACAATAACTATGTGTGCTCCTGCGAGTTTGTGGCGTTCGTGCAGCAGGACCTCCTCCACATGGTCAGGCTGCCCGACTGGCCTCAGAGTTACATGTGCGACTCCCCCACGGCTCTGAGAGGAGTCCTGGTCCGAGACGCCCGGCACTCGGTCTTCGAGTGTCACATGACCGCGGTCGTGGCGGTGCTCTGCACAGGCGTGACCTTGACGTTCCTGGTTGTGGGGACCCTGTGCTACAAGCTGCACGCCGTGTGGTACCTCAGAATGAGCTGGGCCTGGATCCGGGCCAAGAGGAAGCCCGCTGCGCCCCAGAGCAGTGAGCTGTGCTACGATGCCTTCGTGTCCTACAGCGAGAGGGACTCCGAGTGGGTGGAGAACTACCTGGTGGCGGAGCTGGAGAGTGTCCTGCCTCCCTTCAAGCTCTGCCTGCACAAGCGAGACTTCCTCCCTGGGAAGTGGATCATGGACAACATCATCAACTCCATCGAGCAGAGCCGCAAGACGCTGTTCGTGCTGTCACGCCACTTTGTCAGCAGCGAGTGGTGCAAGTACGAGCTGGACTTCTCCCACTTCCGGCTCTTTGACGAGAGCACCGACACAGCCGTGCTCATCCTGCTGGAGCCCATTCCCAAGGAGACCATCCCCAAGAGGTTCTGCAAGCTGCGTCAGGTCATGAACTCCCGGACCTACCTGGAGTGGCCAGAGGACGAGGAGCTCAGGCCCATCTTCTGGTACAACCTCAAACTGGCCATTAAGAACCAGGACTGCACAGCAGACTAA

Function

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K10159 TLR2, CD282; toll-like receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127443 lncRNA upstream 520381 32065836 ~ 32067452 (+) True G102043
TU127431 lncRNA upstream 591807 31994130 ~ 31996026 (+) False AMCG00015967
TU127433 lncRNA upstream 591807 31994130 ~ 31996026 (+) True AMCG00015967
TU127389 lncRNA upstream 759259 31828190 ~ 31828574 (+) True G101997
TU127365 lncRNA upstream 852879 31734174 ~ 31734954 (+) True G101979
TU127633 lncRNA downstream 128879 32719090 ~ 32723878 (+) False G102193
TU127636 lncRNA downstream 128879 32719090 ~ 32723878 (+) True G102193
TU127651 lncRNA downstream 192505 32782716 ~ 32791133 (+) True G102202
TU127653 lncRNA downstream 205847 32796058 ~ 32796335 (+) True G102203
TU127654 lncRNA downstream 207123 32797334 ~ 32798557 (+) True G102204
AMCG00015988 mRNA upstream 10610 32576870 ~ 32577223 (+) True AMCG00015988
AMCG00015986 mRNA upstream 95313 32476372 ~ 32492520 (+) True AMCG00015986
AMCG00015982 mRNA upstream 112578 32470381 ~ 32475255 (+) True AMCG00015982
AMCG00015980 mRNA upstream 134544 32449256 ~ 32453289 (+) True AMCG00015980
AMCG00015981 mRNA upstream 190699 32393774 ~ 32397134 (+) False AMCG00015981
AMCG00015992 mRNA downstream 88912 32679123 ~ 32682135 (+) True AMCG00015992
AMCG00015995 mRNA downstream 107846 32698057 ~ 32702009 (+) True AMCG00015995
AMCG00015994 mRNA downstream 138997 32729208 ~ 32746535 (+) True AMCG00015994
AMCG00015996 mRNA downstream 162572 32752783 ~ 32755820 (+) True AMCG00015996
TU127514 other upstream 190423 32382249 ~ 32397410 (+) True AMCG00015981
TU127466 other upstream 416758 32164196 ~ 32171075 (+) True G102064
TU127412 other upstream 635963 31948475 ~ 31951870 (+) True AMCG00015966
TU127369 other upstream 841717 31740528 ~ 31746116 (+) False AMCG00015959
TU127648 other downstream 189902 32780113 ~ 32781716 (+) True G102201
TU127749 other downstream 317288 32907499 ~ 32909553 (+) True G102286

Expression Profile