RNA id: AMCG00015994


Basic Information

Item Value
RNA id AMCG00015994
length 2184
RNA type mRNA
GC content 0.62
exon number 16
gene id AMCG00015994
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32729208 ~ 32746535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACACAGCTGCCCTGTGACAGCGACGGTGTCCGACACAGCTGCCCTGTGACAGCGACGGTGTCCGACACAGCTGCCCTTTCACGGCGACGGTGTCCGACACAGCTGCCCTGCGGCCGCCGCAGCGCTCCAGTGTGCCGATGCTCAGGTGTCCGTTGCGCGCCGTGCGGGGCTGGCTGTGCGGGTGTCGTGCGGCCGCCAGCTGCGCCTCTGGAAACGCGTCCAGTCCCGCAAATGTCAAAACACGCAGCAGCCGCAGCACACGGGCCCTGCACGGCCAGAGCCGCGGGCACGGCGGGCACCAGAGCCGCCCACACCGGGGCTGCGGCGAGGACTCTGTTAGGATCGGCTGCGCGTCTGGGTTCTGGGGAGACACCTCGGTATcagTCCCGCAGCTCGTACACGGAGGAAACCTGGACTTCCTGGTGTTCGACTATCTGTCTGAGATCACCATGTCCCTCCTGACTGCCGCGAAGGCCAAGTCTCCAAAAGACTCTCTGAAGGAGCTCAGAGTCAGAGACATGGAGAACAGGAGGCCACTGCCCGACGCCCTGCACAGCATGAACGCCTACCTGGGCGCCTTGCCCATCAAGCGCTGCCTGGACCTGGGGGCTGACATCGTGGTGACGGGCCGCTGTGTGGATAGCGCCCTGGTGCTGGGGCCCCTGATGCACGCGTTCGGCTGGAGGCAGAACAGCTATGACCTGCTGGCCGCAGGAAGGCACAACATCGGCTTCCCCATCGTGGAGTGCTCCCCCGATGGCTCCTTCGTCCTCTCCAAGCCCCCACGCACGGGCGGCCTGGTGTCCTTCGGCACGGTGGCGGAGCAGCTGGTCTATGAGATCGGGGACCCGGAGCGATACCTGCTGCCCAACGTGACCTGCGACTTCTCCCGGGCCACCATCACCGAGATCGCAGGTGTGGACGGTGGAGCCGTGCGGGTCCAGGGTGCGAGAGGCTCCGCCCCCTCCGGTGACTATAAGGTCTGCGCGACGTATCTGGACGGGTTCAGAGCCACCGCTGTGTGTCCGGTGGGGGGGCCGCGAGCCGCGGAGAAGGGCCGCCGGACAGCGGAGAGCATTTTAAAGAGGACTCAGGGGATTTTCAAGAAGCTGGGCCTGGACGACTTCAGCTCTGTGAACGTGCAGGTGCTGGGATCGGAGGACACCTACGGGCCGCACGCGCGCAGCCAGGAGGACGTATGGGCGGGGGCCGCGCGAGGTCGTTGTGTGGCTCGCCGTCCACCATCACCAGAAGGCGGCTCTGGAAGTGTTTGCCAGGGAGATTGCTCCGGCGGGAACCGGGATGGcCCCGGGACTCACAGGAATAGTGGGAGGACGGCCCAGAGTGTTCATATTCACATGGATGGAGAACTTGTTGAAACCCTGCAGGAGGACGACCTGTTCTTACTGGAGACACCGCCCCCCCGCGAGGCTGAGAAGAACAGCAATGAGCTGCAAGACTTGCCCTGCGGTCCCTGCAGATACCGGCTAGAAGAGCTGGCCTACACCAGGAGTGGAGACAAGGGGGACAGTGCTAACATAGGTGTGATCGCCCGGCACCCCCTGTTCTACCCCTACCTGAAGAAGCTCCTGACTGCAGGGGCCGTGGAGGGATATTTCCAGCACCTCCTACGGAGAGACAGCGACAGCGAGGCGCCGGCTGTGACGCGGTTTGAGCTGCCGGGGATCTTTGGGCTGAACTTCGTCCTGCGGAGTTCCCTGGGCGGGGGGGGCGTGGCCTCTCTCCGCAGCGACCCCCAGGGAAAGGCGTTTGGGCAGATGCTCCTGGATTACCAAATCAAAGGTTTACCCGATTTAAAGTCACTCGTGGACTGATCCAGCAAACTGACAGGGCTCACCGAAGCCCCCGATCAAGATGTGAAATGATTGCCTTACCGATATAAGTGCCATAAACCGAGtgctttttttagttttttgttgctgctgtCGTTTCTTACACAAGCGCACTCGTTGTGTTTTCGTTAAATccctttattttgaaatcagcCTGTCCTGTGAACCCACTCACCGCCTCGTGCCCAGAACTCCACTGACTTGTTTCCGTAACGCCACAGGGAAGACTGatgccttttattttctgtaacaggATTCTCTTTGTGGGGAGGGTCCGGTGTGTCCGGCCGTGTGGAATAAACATGTATGATGCCGTGTGTAAGATCTGT

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127633 lncRNA upstream 5330 32719090 ~ 32723878 (+) False G102193
TU127636 lncRNA upstream 5330 32719090 ~ 32723878 (+) True G102193
TU127443 lncRNA upstream 661756 32065836 ~ 32067452 (+) True G102043
TU127431 lncRNA upstream 733182 31994130 ~ 31996026 (+) False AMCG00015967
TU127433 lncRNA upstream 733182 31994130 ~ 31996026 (+) True AMCG00015967
TU127651 lncRNA downstream 36181 32782716 ~ 32791133 (+) True G102202
TU127653 lncRNA downstream 49523 32796058 ~ 32796335 (+) True G102203
TU127654 lncRNA downstream 50799 32797334 ~ 32798557 (+) True G102204
TU127669 lncRNA downstream 96655 32843190 ~ 32843498 (+) True G102219
TU127670 lncRNA downstream 97069 32843604 ~ 32843847 (+) True G102220
AMCG00015995 mRNA upstream 27199 32698057 ~ 32702009 (+) True AMCG00015995
AMCG00015992 mRNA upstream 47073 32679123 ~ 32682135 (+) True AMCG00015992
AMCG00015993 mRNA upstream 138997 32587833 ~ 32590211 (+) True AMCG00015993
AMCG00015988 mRNA upstream 151985 32576870 ~ 32577223 (+) True AMCG00015988
AMCG00015986 mRNA upstream 236688 32476372 ~ 32492520 (+) True AMCG00015986
AMCG00015996 mRNA downstream 6248 32752783 ~ 32755820 (+) True AMCG00015996
TU127514 other upstream 331798 32382249 ~ 32397410 (+) True AMCG00015981
TU127466 other upstream 558133 32164196 ~ 32171075 (+) True G102064
TU127412 other upstream 777338 31948475 ~ 31951870 (+) True AMCG00015966
TU127369 other upstream 983092 31740528 ~ 31746116 (+) False AMCG00015959
TU127648 other downstream 33578 32780113 ~ 32781716 (+) True G102201
TU127749 other downstream 160964 32907499 ~ 32909553 (+) True G102286

Expression Profile