RNA id: TU118615


Basic Information

Item Value
RNA id TU118615
length 1042
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G95090
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 589139 ~ 590180 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGAGTTGACTGAAGAGATGCCGAAAGAAAGACGCCTGGTGAAGAGAGACAAATGTAAAAGCGGGTTTTAATGGACTCTAAAACTAAGTGGTGTAGTGGATTTGCAAAGTGAAGAGCAAAGCAGCCTTAGTTGGGGAAACCATAATGGAAGATGGACTTGTAAGTTTTAAACAATGGGAATGTACTTGAACATGACAGAAGTGAACTGAAGGTTAAAGTCTTGAAAAGAGGAAATCGGAAGAGGTCCACCTGACCTGAACTCTAACACGCTGAAACCCAGGATACGGTTGGAGTGCCTTCTTTATTTTCCAGTCCTTGGAAAACTACAGATTTATATTCTATATCAAAGTTCTATGTGAATTGCTGGATTTGACTGTGAAACATACGGTTCTTTTCCATTTCCGGTGTGCTGCTAATGATTGCTTGCGTGTAAAAAATTATTAACCTATGGTTTGCACTTTGACGAGTTTAATTTTCGGCACTTGTCACTTTATAGCATTTACTATAGCATTTAGTATATGTATGGCATACATCACTTTAAAAGAAGGAAGTTACTGTTTGCACTGACCTACGCTGAACATTTTGCCCTCTTTATGGCTACATGCACTTTAAAAGGCGTTATTGCTgtcttttttggtttcttttgtttcattaacttattgtttattatttgtgaaCCTACTCGAGTATGGTGAATGTGGGCCCATTAAacgtttgtttgttattgtcatCGTAAAGAGTTGTGTTTTTACAGACAGAGGTGTATTGTATGTTTGGAAATtggcatatgtatttattgtgatttagtCTTTATGGACATTGGTTAAACTCTCTGAACTGATAGAACTTTGGGTGGGCAGGGAACGTAAAACGTGAATTGTGATTCTATTTATGAAATAGTTTTCTGTATAATCTATGTGTTAATGATGATTTATGCAATTAATTGTGTTCACCATGAATAGAAATTGCTCTATATATGTATGCCGTCTACAGCTGTAATTCTTTACCACCTACCCTTGATATAATAAAGTCTCATGTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118606 lncRNA upstream 27300 561508 ~ 561839 (+) True G95081
TU118605 lncRNA upstream 41009 547896 ~ 548130 (+) True G95080
TU118566 lncRNA upstream 262555 326176 ~ 326584 (+) True G95055
TU118561 lncRNA upstream 298617 290168 ~ 290522 (+) True G95050
TU118494 lncRNA upstream 573995 14922 ~ 15144 (+) True G94986
TU118638 lncRNA downstream 235621 825801 ~ 826463 (+) True G95112
TU118658 lncRNA downstream 386867 977047 ~ 980025 (+) True G95131
TU118677 lncRNA downstream 572789 1162969 ~ 1192383 (+) True G95148
TU118722 lncRNA downstream 693527 1283707 ~ 1284046 (+) True G95189
TU118723 lncRNA downstream 716617 1306797 ~ 1306997 (+) True G95190
AMCG00015058 mRNA upstream 447336 140790 ~ 141803 (+) True AMCG00015058
AMCG00015067 mRNA downstream 297834 888014 ~ 894038 (+) True AMCG00015067
AMCG00015076 mRNA downstream 897254 1487434 ~ 1489959 (+) True AMCG00015076
AMCG00015075 mRNA downstream 919198 1509378 ~ 1517119 (+) True AMCG00015075
AMCG00015077 mRNA downstream 929060 1519240 ~ 1538536 (+) False AMCG00015077
AMCG00015079 mRNA downstream 955051 1545231 ~ 1546105 (+) True AMCG00015079
TU118603 other upstream 42394 546229 ~ 546745 (+) True G95078
TU118644 other downstream 288909 879089 ~ 938986 (+) True G95117
TU118826 other downstream 992014 1582194 ~ 1596895 (+) True AMCG00015081
TU119071 other downstream 1610757 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 2067305 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 2074324 2664504 ~ 2666126 (+) True G95624

Expression Profile