RNA id: TU118739



Basic Information


Item Value
RNA id TU118739
length 793
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G95205
representative True

Chromosome Information


Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 1347049 ~ 1354735 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


catttttgagCAATTGCCATGTGCGCTCTAGCAAACCCCTCTGTGCAGTGTACAAACCCTACGAATATCTAGCCCTATATGAATTGCTCATTTTGTAATGCTGTATAAATCCAGCAGAATAATTATCACAAGTGAGATATGAGGTTTTAAttccttaaatatttatttaattacaaactgTATACAAATCAAAAACTGAATTCTGTGAACAGGGTGTTCTTGAGCAACCATTTTGAATTCCATCTGCTCTTACACTGCCACAATTGAAAGGGGGGGCAACTCTGAAATAGAAACAGTTGATCCAGTTCAGTTCAAGTAAAGGGTCAGGTCTTTTATTCTGGTATCAGTTTCCAACCACAGCAGCTCCCAGTTGCAGActcctGGTACCTTACTCTTGTCTAGATCCTCCCAGAATCCCTGAGCTTGCTGACCAGGTCCTCCACAGACTCCACTTTGACTCCGGCTTCTCTCTGTGGGGGTTCATCCACACTGACCACCTCTATTCGTGAGATCAGGTCTACTCCCAGGTCACTTGGCTTCATGTAATCaatcttctttttctttgctttCATGATATTTGGCAGAGTGGCATACCGGGGTGTGTTAAGGCGGAGGTCAGCTGTCACAACTGCTGGCATCTTAATTTGTATGGTCTCTAGGCCGCCATCAATCTCTCGGACTACCTTAATCTTGTCCCCCTCAATAACCACCTCTGAGGCAAACGTTccctaTGGGCCCAATCAAGCATGGCTGCTGTCATCTGTCCAGTCTGATTGTTGTCATCATCAATGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU118723 lncRNA upstream 40052 1306797 ~ 1306997 (+) True G95190
TU118722 lncRNA upstream 63003 1283707 ~ 1284046 (+) True G95189
TU118677 lncRNA upstream 154666 1162969 ~ 1192383 (+) True G95148
TU118658 lncRNA upstream 367024 977047 ~ 980025 (+) True G95131
TU118638 lncRNA upstream 520586 825801 ~ 826463 (+) True G95112
TU118745 lncRNA downstream 6078 1360813 ~ 1361389 (+) True G95209
TU118803 lncRNA downstream 163923 1518658 ~ 1539558 (+) True AMCG00015077
TU118813 lncRNA downstream 184903 1539638 ~ 1539890 (+) True G95268
TU118815 lncRNA downstream 185268 1540003 ~ 1543430 (+) True G95270
TU118823 lncRNA downstream 210300 1565035 ~ 1565242 (+) True G95278
AMCG00015067 mRNA upstream 453011 888014 ~ 894038 (+) True AMCG00015067
AMCG00015058 mRNA upstream 1205246 140790 ~ 141803 (+) True AMCG00015058
AMCG00015076 mRNA downstream 132699 1487434 ~ 1489959 (+) True AMCG00015076
AMCG00015075 mRNA downstream 154643 1509378 ~ 1517119 (+) True AMCG00015075
AMCG00015077 mRNA downstream 164505 1519240 ~ 1538536 (+) False AMCG00015077
AMCG00015079 mRNA downstream 190496 1545231 ~ 1546105 (+) True AMCG00015079
AMCG00015081 mRNA downstream 238088 1592823 ~ 1596862 (+) False AMCG00015081
TU118644 other upstream 408063 879089 ~ 938986 (+) True G95117
TU118603 other upstream 800304 546229 ~ 546745 (+) True G95078
TU118826 other downstream 227459 1582194 ~ 1596895 (+) True AMCG00015081
TU119071 other downstream 846202 2200937 ~ 2217102 (+) True G95486
TU119235 other downstream 1302750 2657485 ~ 2658751 (+) True G95618
TU119243 other downstream 1309769 2664504 ~ 2666126 (+) True G95624
TU119325 other downstream 1452076 2806811 ~ 2808495 (+) True G95693

Expression Profile